; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022019 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022019
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDPH4 homolog
Genome locationscaffold47:45483..45953
RNA-Seq ExpressionMS022019
SyntenyMS022019
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001623 - DnaJ domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR036869 - Chaperone J-domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444636.1 PREDICTED: DPH4 homolog [Cucumis melo]2.2e-6073.18Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  G+IGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMC+KSHP D+ G+ YFKVQKAWEV GS  SRA+YDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID
            DKG+VV+LFYQCRCG   FIDSGEL+EMGYPLLRNGSKVSLRTL+ALPASVVLPCGSCSLK+ L+ID  SSVSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID

XP_022144178.1 DPH4 homolog [Momordica charantia]8.3e-6881.36Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSSGYG IGETYYDVLSLK DASY EIRASYRSA L+FHPDKLQAMCQKSHP DLSG+ YFKVQKAWEV GSSTSRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSID
            DKG+VV+LFYQCRCG   FIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLK+RLLIDSSV ID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSID

XP_023001945.1 DPH4 homolog isoform X1 [Cucurbita maxima]1.3e-6074.3Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  GSIGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMCQKSHP D+ G+ YFKVQKAWEV GSS SRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID
            DKG+VV+L YQCRCG   FIDSGELEEMGYP+LR GSKVSLRTL+ALPAS+VLPCGSCSLK+RLLIDS   VSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID

XP_023001946.1 DPH4 homolog isoform X2 [Cucurbita maxima]1.3e-6074.3Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  GSIGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMCQKSHP D+ G+ YFKVQKAWEV GSS SRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID
            DKG+VV+L YQCRCG   FIDSGELEEMGYP+LR GSKVSLRTL+ALPAS+VLPCGSCSLK+RLLIDS   VSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID

XP_038884890.1 DPH4 homolog isoform X2 [Benincasa hispida]4.0e-6275.98Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  GSIGETYYDVLSLK+DASY EIRASYRSA L+FHPDKLQAMC KSHP D++ + YFKVQKAWEV GSS SRA+YDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID
            DKG+VV+LFYQCRCG   FIDSGEL+EMGYPLLRNGSKVSLRTL+ALPASVVLPCGSCSLK+RLLID  SSVSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID

TrEMBL top hitse value%identityAlignment
A0A0A0LKX8 Uncharacterized protein6.9e-6073.99Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        M+S  GSIGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMC KSHP D+ G+ YFKVQKAWEV GSS SRA+YDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS
            DKG+VV+L YQCRCG   FIDSGEL+EMGYPLLRNGSKVSLRTL ALPASVVLPCGSCSLK+RLLIDS+
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS

A0A1S3BBM0 DPH4 homolog1.1e-6073.18Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  G+IGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMC+KSHP D+ G+ YFKVQKAWEV GS  SRA+YDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID
            DKG+VV+LFYQCRCG   FIDSGEL+EMGYPLLRNGSKVSLRTL+ALPASVVLPCGSCSLK+ L+ID  SSVSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLID--SSVSID

A0A6J1CSL8 DPH4 homolog4.0e-6881.36Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSSGYG IGETYYDVLSLK DASY EIRASYRSA L+FHPDKLQAMCQKSHP DLSG+ YFKVQKAWEV GSSTSRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSID
            DKG+VV+LFYQCRCG   FIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLK+RLLIDSSV ID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSID

A0A6J1KK19 DPH4 homolog isoform X26.2e-6174.3Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  GSIGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMCQKSHP D+ G+ YFKVQKAWEV GSS SRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID
            DKG+VV+L YQCRCG   FIDSGELEEMGYP+LR GSKVSLRTL+ALPAS+VLPCGSCSLK+RLLIDS   VSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID

A0A6J1KMK1 DPH4 homolog isoform X16.2e-6174.3Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------
        MSS  GSIGETYYDVLSL++DAS+ EIRASYRSA L+FHPDKLQAMCQKSHP D+ G+ YFKVQKAWEV GSS SRAAYDRELQAAK             
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHP-DLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAK-------------

Query:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID
            DKG+VV+L YQCRCG   FIDSGELEEMGYP+LR GSKVSLRTL+ALPAS+VLPCGSCSLK+RLLIDS   VSID
Subjt:  ----DKGKVVKLFYQCRCG--VFIDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSS--VSID

SwissProt top hitse value%identityAlignment
A1JJD6 Chaperone protein DnaJ3.6e-0533.33Show/hide
Query:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKDKG
        YY+VL +K+DA   EI+ +Y+   + +HPD+ Q        + +G+ + +V++A+E+      RAAYD+   AA ++G
Subjt:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKDKG

B1KRT1 Chaperone protein DnaJ4.6e-0536.25Show/hide
Query:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFK-VQKAWEVHGSSTSRAAYDRELQAAKDKGK
        YY+VLS+ +DAS  EI+ +Y+   + FHPD       ++  D + +T FK V++A+E+   S  +AAYD+   A  D  +
Subjt:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFK-VQKAWEVHGSSTSRAAYDRELQAAKDKGK

P47138 Diphthamide biosynthesis protein 41.6e-0531.43Show/hide
Query:  TYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDR-ELQAAKDKGKVVKLFYQCRCGVFIDSGEL
        T+Y++L +  DA+  EI+ +YR+  L+ HPDKL    +  H  +S  T  K+Q A+++  +  +R  YDR  L+  K +G     F+ C  G  +D   L
Subjt:  TYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDR-ELQAAKDKGKVVKLFYQCRCGVFIDSGEL

Query:  EEMGY
        ++  +
Subjt:  EEMGY

Q493S6 Chaperone protein DnaJ4.6e-0533.33Show/hide
Query:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFK-VQKAWEVHGSSTSRAAYDRELQAAKDKGKV
        YY++L + ++A   EI+ SY+   + FHPD       ++  + + +T FK +++A+EV  +S  RAAYD+   AA + G +
Subjt:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFK-VQKAWEVHGSSTSRAAYDRELQAAKDKGKV

Q87RX2 Chaperone protein DnaJ2.7e-0533.33Show/hide
Query:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKDKG
        +Y+VL + +DAS  +I+ +Y+   + FHPD+ Q        + + D + +V++A+EV   S  +AAYD+   AA ++G
Subjt:  YYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKDKG

Arabidopsis top hitse value%identityAlignment
AT1G56300.1 Chaperone DnaJ-domain superfamily protein2.8e-0527.85Show/hide
Query:  GYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDT---YFKVQKAWEVHGSSTSRAAYD
        G  ++  +YY +L +++DAS  +IR +YR   + +HPD+        +P ++G+    + ++Q+A+ V      R+ YD
Subjt:  GYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDT---YFKVQKAWEVHGSSTSRAAYD

AT1G72416.1 Chaperone DnaJ-domain superfamily protein4.0e-0430Show/hide
Query:  ETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYD
        E  Y VL L  + + G++R SY++  L +HPD+     +K    +    +  +Q+A+ V   S  R  YD
Subjt:  ETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYD

AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein2.4e-0434.18Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYD
        M+S   S    +Y+VL + +++S  EIR+SYR   L  HPDKL      S  + +   + ++  A+EV      RA YD
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYD

AT4G10130.1 DNAJ heat shock N-terminal domain-containing protein4.9e-3445.71Show/hide
Query:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKD-------------
        M  G   + ETYY++LS+K+DASY EIR SYRSA L  HPDKL    + S  D   + + K+QKAWEV   +  R  YD +L++++              
Subjt:  MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKD-------------

Query:  ----KGKVVKLFYQCRCGVF--IDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSI
             G V+ LFYQCRCG +  +DS EL  MG+ LLR+G  V ++ L A  ASVVLPCGSCSLK R+ +DS + I
Subjt:  ----KGKVVKLFYQCRCGVF--IDSGELEEMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSI

AT4G37480.1 Chaperone DnaJ-domain superfamily protein2.4e-0432.88Show/hide
Query:  ETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDREL
        E  YD+L++ + +S  EI+AS+R      HPD +++   K  P  +   + ++  A+E+   S  RA YDR L
Subjt:  ETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDREL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGGGCTATGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAAGCAAGATGCTAGCTATGGCGAAATTCGAGCTAGTTACCGGTCTGCTCCCCTTAG
TTTCCATCCTGATAAGTTACAAGCTATGTGCCAGAAATCTCATCCCGACCTTTCAGGAGATACATATTTCAAGGTGCAGAAGGCTTGGGAAGTCCACGGCAGCTCGACAT
CTCGTGCAGCTTACGACAGAGAGCTCCAAGCTGCCAAAGATAAAGGTAAAGTTGTAAAACTCTTTTATCAGTGCAGATGCGGTGTCTTTATTGATTCTGGGGAGTTGGAG
GAAATGGGATATCCATTGTTGAGAAATGGGAGTAAGGTTTCTTTGAGGACGCTGGAGGCTTTGCCTGCATCTGTTGTTTTGCCATGTGGTTCTTGCTCTTTGAAACTTCG
TTTGCTGATTGATTCAAGTGTTTCAATTGAT
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCGGGCTATGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAAGCAAGATGCTAGCTATGGCGAAATTCGAGCTAGTTACCGGTCTGCTCCCCTTAG
TTTCCATCCTGATAAGTTACAAGCTATGTGCCAGAAATCTCATCCCGACCTTTCAGGAGATACATATTTCAAGGTGCAGAAGGCTTGGGAAGTCCACGGCAGCTCGACAT
CTCGTGCAGCTTACGACAGAGAGCTCCAAGCTGCCAAAGATAAAGGTAAAGTTGTAAAACTCTTTTATCAGTGCAGATGCGGTGTCTTTATTGATTCTGGGGAGTTGGAG
GAAATGGGATATCCATTGTTGAGAAATGGGAGTAAGGTTTCTTTGAGGACGCTGGAGGCTTTGCCTGCATCTGTTGTTTTGCCATGTGGTTCTTGCTCTTTGAAACTTCG
TTTGCTGATTGATTCAAGTGTTTCAATTGAT
Protein sequenceShow/hide protein sequence
MSSGYGSIGETYYDVLSLKQDASYGEIRASYRSAPLSFHPDKLQAMCQKSHPDLSGDTYFKVQKAWEVHGSSTSRAAYDRELQAAKDKGKVVKLFYQCRCGVFIDSGELE
EMGYPLLRNGSKVSLRTLEALPASVVLPCGSCSLKLRLLIDSSVSID