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MS022029 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022029
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold47:131987..132082
RNA-Seq ExpressionMS022029
SyntenyMS022029
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ATL22820.1 RNA polymerase beta subunit [Cryptocarya hainanensis]1.6e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

QWL20011.1 RNA polymerase beta subunit [Cryptocarya brachythyrsa]1.6e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

YP_009127270.1 RNA polymerase beta subunit [Ceratonia siliqua]3.5e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR++QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

YP_009432869.1 RNA polymerase beta chain [Cryptocarya chinensis]1.6e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

YP_010008282.1 RNA polymerase beta subunit [Quisqualis littorea]1.6e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

TrEMBL top hitse value%identityAlignment
A0A0U5ELY3 DNA-directed RNA polymerase subunit beta2.2e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A0A1C7D2M2 DNA-directed RNA polymerase subunit beta1.7e-0584.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR++QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A0A291PUK7 DNA-directed RNA polymerase subunit beta7.5e-0684.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A0A291PUT1 DNA-directed RNA polymerase subunit beta7.5e-0684.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A0A7S6HDZ8 RNA polymerase beta subunit7.5e-0684.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTI+GGTILKP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

SwissProt top hitse value%identityAlignment
A4QJA7 DNA-directed RNA polymerase subunit beta1.0e-0784.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A4QK10 DNA-directed RNA polymerase subunit beta1.0e-0784.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A4QK97 DNA-directed RNA polymerase subunit beta1.0e-0784.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

A4QKI4 DNA-directed RNA polymerase subunit beta1.0e-0784.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

P50546 DNA-directed RNA polymerase subunit beta1.0e-0784.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP

Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta7.2e-0984.38Show/hide
Query:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP
        ILQEMLTYK  HIR +QEVLGTTIIGGTI KP
Subjt:  ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTTACAAGAGATGCTTACTTATAAATTTGGTCATATTAGAGTTCAACAAGAAGTACTTGGTACTACGATTATTGGAGGAACAATACTTAAACCC
mRNA sequenceShow/hide mRNA sequence
ATTTTACAAGAGATGCTTACTTATAAATTTGGTCATATTAGAGTTCAACAAGAAGTACTTGGTACTACGATTATTGGAGGAACAATACTTAAACCC
Protein sequenceShow/hide protein sequence
ILQEMLTYKFGHIRVQQEVLGTTIIGGTILKP