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MS022031 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022031
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome b6-f complex subunit 7
Genome locationscaffold47:153965..154546
RNA-Seq ExpressionMS022031
SyntenyMS022031
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008454894.1 PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]2.4e-4889.15Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI
        MATASATLS AMSTAAPIAAGSRR QR  NVHYITGLNSFGGLKAHNNVVSLGLP+C D SFAKIVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRI
Subjt:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEAYVEETE
        AAIINGLVL+GVAVGFVLLRIEA VEE E
Subjt:  AAIINGLVLVGVAVGFVLLRIEAYVEETE

XP_022136275.1 uncharacterized protein LOC111008007 [Momordica charantia]1.9e-5898.45Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI
        MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGK  GGGGGALSSTCNAAGEIFRI
Subjt:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEAYVEETE
        AAIINGLVLVGVAVGFVLLRIEAYVEETE
Subjt:  AAIINGLVLVGVAVGFVLLRIEAYVEETE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]3.4e-4787.5Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA
        ATASATLSPA+STAAPIAAGSRR QR+ NVHYITGLNSFGGLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRIA
Subjt:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEAYVEETE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEAYVEETE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]1.3e-4686.72Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA
        ATASATLSP +STAAPIAAGSRR QR+ NVHYITGLNSFGGLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRIA
Subjt:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEAYVEETE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEAYVEETE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]9.0e-4887.6Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI
        MATASATLSPAM TAAPIAAGSRR QR  NVHYITGLNSFGGLKAHNNVVSLGLP+C D SFA I+SSLKYPSKGKGK    GGGALSSTCNAAGEIFRI
Subjt:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEAYVEETE
        AAIINGLVL+GVAVGFVLLRIEA VEE E
Subjt:  AAIINGLVLVGVAVGFVLLRIEAYVEETE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein2.1e-5068.56Show/hide
Query:  SLSIQSSSTSPKIP-----------LSHTGSSPNL------SFPSGFSINLT---LLPLLSGN-SMATASATLSPAMSTAAPIAAGSRRSQRHHNVHYIT
        S SIQ+  + P +P           L H+GS P+L       FPS FS+N+     LPLLSG   MATASATLS AMS+AAPI+AGSRR QR  N H+I+
Subjt:  SLSIQSSSTSPKIP-----------LSHTGSSPNL------SFPSGFSINLT---LLPLLSGN-SMATASATLSPAMSTAAPIAAGSRRSQRHHNVHYIT

Query:  GLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAYVEETE
        GLNSF GLKAHNNVVSLGLP+C D SFAKIVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEA VEE E
Subjt:  GLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAYVEETE

A0A1S3C0U4 uncharacterized protein LOC1034952011.1e-4889.15Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI
        MATASATLS AMSTAAPIAAGSRR QR  NVHYITGLNSFGGLKAHNNVVSLGLP+C D SFAKIVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRI
Subjt:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEAYVEETE
        AAIINGLVL+GVAVGFVLLRIEA VEE E
Subjt:  AAIINGLVLVGVAVGFVLLRIEAYVEETE

A0A6J1C3G5 uncharacterized protein LOC1110080079.4e-5998.45Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI
        MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGK  GGGGGALSSTCNAAGEIFRI
Subjt:  MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEAYVEETE
        AAIINGLVLVGVAVGFVLLRIEAYVEETE
Subjt:  AAIINGLVLVGVAVGFVLLRIEAYVEETE

A0A6J1GND2 uncharacterized protein LOC1114555039.1e-4685.16Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA
        AT SATLSP +STAAPIAAGSRR QR+ NVHYITGLNSF GLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRIA
Subjt:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEAYVEETE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEAYVEETE

A0A6J1I5T0 uncharacterized protein LOC1114709411.7e-4787.5Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA
        ATASATLSPA+STAAPIAAGSRR QR+ NVHYITGLNSFGGLKAHNN+ SLGLP+C D SFA IVSSLKYPSKGKGK    GGGALSSTCNAAGEIFRIA
Subjt:  ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEAYVEETE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEAYVEETE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)2.8e-0783.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAYVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAYVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative2.3e-2555.73Show/hide
Query:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF
        MATA+A    + + +  ++ +G  + +    V YITGLNS+GGLKA NN VVS+G PLC +  FA +V SL      KG+   G GGALS+TCNA GEIF
Subjt:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF

Query:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE
        +IAAI+N L LVGVAVGFVLLRIE  VEE E
Subjt:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative2.3e-2555.73Show/hide
Query:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF
        MATA+A    + + +  ++ +G  + +    V YITGLNS+GGLKA NN VVS+G PLC +  FA +V SL      KG+   G GGALS+TCNA GEIF
Subjt:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF

Query:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE
        +IAAI+N L LVGVAVGFVLLRIE  VEE E
Subjt:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative3.9e-0936.64Show/hide
Query:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF
        MATA+A    + + +  ++ +G  + +    V YITGLNS+GGLKA NN VVS+G PLC +  FA +V SLK                            
Subjt:  MATASATLSPAMSTAAPIA-AGSRRSQRHHNVHYITGLNSFGGLKAHNN-VVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIF

Query:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE
                    G  VGFVLLRIE  VEE E
Subjt:  RIAAIINGLVLVGVAVGFVLLRIEAYVEETE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGCCATCCCATCTTATCCATTTCCCCACTCATTTTTCTCCATACAAACCCCATTTCTCCCTTCCCTCTCAATCCAATCCTCTTCAACTTCACCCAAAATTCCTCTTTC
ACACACAGGTTCATCCCCAAATCTCTCTTTCCCATCTGGGTTTTCAATCAATCTCACTCTTCTTCCTCTTCTTTCAGGCAACTCTATGGCGACTGCCTCCGCTACCCTCT
CGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGAGCCAGAGGCACCACAATGTCCACTACATCACTGGCCTCAACTCCTTTGGTGGGCTGAAGGCT
CACAACAATGTCGTCTCCTTGGGCCTTCCCCTGTGCCCTGACCACTCCTTTGCAAAAATTGTGAGTTCTTTGAAATACCCATCAAAAGGAAAGGGCAAATATGGCGGCGG
CGGCGGCGGCGCCCTGTCCTCCACCTGTAATGCCGCCGGTGAGATTTTCAGGATTGCGGCCATTATCAATGGGCTGGTTCTTGTGGGAGTGGCTGTTGGGTTTGTTCTTC
TCCGGATTGAGGCATATGTGGAGGAGACAGAG
mRNA sequenceShow/hide mRNA sequence
ATAGCCATCCCATCTTATCCATTTCCCCACTCATTTTTCTCCATACAAACCCCATTTCTCCCTTCCCTCTCAATCCAATCCTCTTCAACTTCACCCAAAATTCCTCTTTC
ACACACAGGTTCATCCCCAAATCTCTCTTTCCCATCTGGGTTTTCAATCAATCTCACTCTTCTTCCTCTTCTTTCAGGCAACTCTATGGCGACTGCCTCCGCTACCCTCT
CGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGAGCCAGAGGCACCACAATGTCCACTACATCACTGGCCTCAACTCCTTTGGTGGGCTGAAGGCT
CACAACAATGTCGTCTCCTTGGGCCTTCCCCTGTGCCCTGACCACTCCTTTGCAAAAATTGTGAGTTCTTTGAAATACCCATCAAAAGGAAAGGGCAAATATGGCGGCGG
CGGCGGCGGCGCCCTGTCCTCCACCTGTAATGCCGCCGGTGAGATTTTCAGGATTGCGGCCATTATCAATGGGCTGGTTCTTGTGGGAGTGGCTGTTGGGTTTGTTCTTC
TCCGGATTGAGGCATATGTGGAGGAGACAGAG
Protein sequenceShow/hide protein sequence
IAIPSYPFPHSFFSIQTPFLPSLSIQSSSTSPKIPLSHTGSSPNLSFPSGFSINLTLLPLLSGNSMATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKA
HNNVVSLGLPLCPDHSFAKIVSSLKYPSKGKGKYGGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAYVEETE