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MS022034 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022034
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold47:158072..158258
RNA-Seq ExpressionMS022034
SyntenyMS022034
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY95662.1 pentatricopeptide repeat (PPR) superfamily protein [Actinidia rufa]4.1e-1569.23Show/hide
Query:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTV TYNLLIHALF++  E     M+KE+++KGMAP+ ITYNILI G YCR GNAKKAFNLHD+M
Subjt:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

PSS19175.1 Pentatricopeptide repeat-containing protein [Actinidia chinensis var. chinensis]4.1e-1569.23Show/hide
Query:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTV TYNLLIHALF++  E     M+KE+++KGMAP+ ITYNILI G YCR GNAKKAFNLHD+M
Subjt:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

XP_022136116.1 pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Momordica charantia]2.4e-1575.38Show/hide
Query:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF    IDE+E MMKEIQ+ GMAP+ ITYNILI G YCR GN KKAF+LHD+M
Subjt:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

XP_023554102.1 pentatricopeptide repeat-containing protein At2g15630, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]2.0e-1472.31Show/hide
Query:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF+    DE+E M+KEI +KG+AP+ ITYNILI G YCR GNAKKAF LHD+M
Subjt:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

XP_038887485.1 pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Benincasa hispida]1.2e-1473.85Show/hide
Query:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF    IDE+E M+KEIQ+KGM+P+ ITYNILI G YCR GNAKKAF+L D+M
Subjt:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

TrEMBL top hitse value%identityAlignment
A0A2R6R1P3 Pentatricopeptide repeat-containing protein2.0e-1569.23Show/hide
Query:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTV TYNLLIHALF++  E     M+KE+++KGMAP+ ITYNILI G YCR GNAKKAFNLHD+M
Subjt:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

A0A6J1C2M0 pentatricopeptide repeat-containing protein At2g15630, mitochondrial1.2e-1575.38Show/hide
Query:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF    IDE+E MMKEIQ+ GMAP+ ITYNILI G YCR GN KKAF+LHD+M
Subjt:  PTVSTYNLLIHALF----IDESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

A0A6J1GND9 pentatricopeptide repeat-containing protein At2g15630, mitochondrial9.8e-1572.31Show/hide
Query:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF+    DE+E M+KEI +KG+AP+ ITYNILI G YCR GNAKKAF LHD+M
Subjt:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

A0A6J1IB79 pentatricopeptide repeat-containing protein At2g15630, mitochondrial9.8e-1572.31Show/hide
Query:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTVSTYNLLIHALF+    DE+E M+KEI +KG+AP+ ITYNILI G YCR GNAKKAF LHD+M
Subjt:  PTVSTYNLLIHALFI----DESE-MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

A0A7J0FAD1 Pentatricopeptide repeat (PPR) superfamily protein2.0e-1569.23Show/hide
Query:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PTV TYNLLIHALF++  E     M+KE+++KGMAP+ ITYNILI G YCR GNAKKAFNLHD+M
Subjt:  PTVSTYNLLIHALFIDESE-----MMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

SwissProt top hitse value%identityAlignment
O80958 Pentatricopeptide repeat-containing protein At2g39230, mitochondrial3.6e-0646.81Show/hide
Query:  FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        F+  S+M++E++KK + PNV+ Y+ +I GH+ R GN  +AF LHD+M
Subjt:  FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

Q9LSL9 Pentatricopeptide repeat-containing protein At5g655601.8e-0540Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P + TY +LI +L     F    E++ ++ +KG+ PNVITYN LI G YC+RG  + A ++ + M
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

Q9SV46 Pentatricopeptide repeat-containing protein At3g54980, mitochondrial2.7e-0638.46Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P    Y ++++ L     F+   +M +E++K  + PNV+ YN +I GHY R GN  +AF LHD+M
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

Q9ZQF1 Pentatricopeptide repeat-containing protein At2g15630, mitochondrial1.1e-1050.77Show/hide
Query:  PTVSTYNLLIHALFIDE-----SEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PT  TYN LIH LF++        +++EI++KG+  + +TYNILI G YC+ G+AKKAF LHD+M
Subjt:  PTVSTYNLLIHALFIDE-----SEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

Q9ZVX5 Pentatricopeptide repeat-containing protein At2g168801.2e-0435.38Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P   TYN ++ A+       D  E++ +++K G+ PN +TYN L+ G YC+ G+ K+AF + + M
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

Arabidopsis top hitse value%identityAlignment
AT1G62910.1 Pentatricopeptide repeat (PPR) superfamily protein8.2e-0636.92Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P + TYN++I  +       D  E+   +  KG++PNVI YN +I G +CR+G+ ++A +L  KM
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

AT2G15630.1 Pentatricopeptide repeat (PPR) superfamily protein7.6e-1250.77Show/hide
Query:  PTVSTYNLLIHALFIDE-----SEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        PT  TYN LIH LF++        +++EI++KG+  + +TYNILI G YC+ G+AKKAF LHD+M
Subjt:  PTVSTYNLLIHALFIDE-----SEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

AT2G39230.1 LATERAL ORGAN JUNCTION2.5e-0746.81Show/hide
Query:  FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        F+  S+M++E++KK + PNV+ Y+ +I GH+ R GN  +AF LHD+M
Subjt:  FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

AT3G54980.1 Pentatricopeptide repeat (PPR) superfamily protein1.9e-0738.46Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P    Y ++++ L     F+   +M +E++K  + PNV+ YN +I GHY R GN  +AF LHD+M
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM

AT5G65560.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-0640Show/hide
Query:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM
        P + TY +LI +L     F    E++ ++ +KG+ PNVITYN LI G YC+RG  + A ++ + M
Subjt:  PTVSTYNLLIHAL-----FIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAACTGTGTCAACTTATAATTTGCTGATTCATGCATTGTTTATCGATGAATCAGAAATGATGAAAGAAATTCAGAAGAAAGGAATGGCTCCCAATGTCATTACATATAA
TATATTGATAAAGGGACATTATTGTAGACGTGGAAATGCAAAGAAAGCATTTAACCTCCACGATAAGATG
mRNA sequenceShow/hide mRNA sequence
CCAACTGTGTCAACTTATAATTTGCTGATTCATGCATTGTTTATCGATGAATCAGAAATGATGAAAGAAATTCAGAAGAAAGGAATGGCTCCCAATGTCATTACATATAA
TATATTGATAAAGGGACATTATTGTAGACGTGGAAATGCAAAGAAAGCATTTAACCTCCACGATAAGATG
Protein sequenceShow/hide protein sequence
PTVSTYNLLIHALFIDESEMMKEIQKKGMAPNVITYNILIKGHYCRRGNAKKAFNLHDKM