CuGenDBv2

Gene ID	MS022037
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	diphthamide biosynthesis protein 3-like
Genome location	scaffold47:169635..169889
RNA-Seq Expression	MS022037
Synteny	MS022037
Gene Ontology terms	GO:0002098 - tRNA wobble uridine modification (biological process) GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007872 - DPH-type metal-binding domain IPR036671 - DPH-type metal-binding domain superfamily IPR044248 - Diphthamide biosynthesis protein 3/4-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]

2.6e-39

89.41

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDM+WN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]

2.2e-43

100

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

XP_022931585.1 diphthamide biosynthesis protein 3-like [Cucurbita moschata]

7.5e-39

89.41

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS QKNN G++PSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]

2.1e-41

94.12

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDSD KNNKG+QPSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]

4.7e-41

92.94

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS+QKNNKG++PSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BZL5 diphthamide biosynthesis protein 3-like

1.2e-39

89.41

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDM+WN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like

1.2e-39

89.41

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDM+WN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFL DS+QKNNKG++PSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like

1.1e-43

100

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

A0A6J1EZW6 diphthamide biosynthesis protein 3-like

3.6e-39

89.41

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS QKNN G++PSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like

1.0e-41

94.12

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDSD KNNKG+QPSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

SwissProt top hits

e value

%identity

Alignment

P0C0V4 Diphthamide biosynthesis protein 3

2.2e-17

54.17

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Query:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGI
        YD++EIEDM ++  LQ Y YPCPCGD F+I  +DLR GE+IA CPSCSL I VI++  D L   ++K  +G+
Subjt:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGI

Q21102 DPH3 homolog

1.7e-17

59.02

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Query:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E+++E   Y YPCPCGD F+I +E L +GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL

Q6VUC1 DPH3 homolog

2.9e-17

57.38

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Query:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++++ + Y YPCPCGD F ITKEDL  GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL

Q96FX2 DPH3 homolog

3.7e-17

57.38

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Query:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++++ + Y YPCPCGD F ITKEDL  GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFL

Q9VGQ9 DPH3 homolog

2.6e-18

57.35

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Query:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKN
        +D+VEIED E+++E + Y YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F  + D+++
Subjt:  YDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKN

Arabidopsis top hits

e value

%identity

Alignment

AT2G15910.1 CSL zinc finger domain-containing protein

2.6e-34

79.27

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPI
        MSYDDVEIEDMEWN+E+QAYTYPCPCGDLFQITKEDLRLGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   +P  + P+
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPI

AT2G15910.2 CSL zinc finger domain-containing protein

1.8e-35

78.82

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Query:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA
        MSYDDVEIEDMEWN+E+QAYTYPCPCGDLFQITKEDLRLGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   +P  + P+ VA
Subjt:  MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

Sequences

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CDS sequence

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ATGTCCTACGACGACGTGGAGATAGAAGATATGGAGTGGAACCAGGAACTGCAGGCCTACACTTACCCATGCCCCTGCGGCGACTTGTTCCAGATCACGAAGGAGGATCT
TAGGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTTGGAGATTCTGATCAGAAGAATAACAAAGGAA
TTCAGCCCTCCAAACAACAGCCTATCGTCGTCGCT

mRNA sequence

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Protein sequence

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MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLRLGEEIARCPSCSLYITVIYNMEDFLGDSDQKNNKGIQPSKQQPIVVA

MS022037 (gene) of Bitter gourd (TR) v1 genome