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MS022055 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022055
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold47:317409..317714
RNA-Seq ExpressionMS022055
SyntenyMS022055
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.5e-1341.05Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLT
        W+ PP + WKLNT+ +W +    GGIGWIL D  G ++ AG   +  + +I  LE M ++ GL+ IN + R    +ESD +E++ L+K  D DLT
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-1444.12Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLTEISFS
        W  P  + WKLNTN  W    N GGIGWILRD  G +I A CR++     I  LE MA+ EGL++I +E      +ESD LE ++LL     D TEI + 
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLTEISFS

Query:  ID
        ++
Subjt:  ID

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.5e-1244.83Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL
        W  P  + WKLNT+  W    N  GIGWILRD  G +I  GCR++     I  LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.5e-1244.83Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL
        W  P  + WKLNT+  W    N  GIGWILRD  G +I  GCR++     I  LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.9e-1241.82Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKE-------ERLETI-VESDCLELVNLLKGVDS
        W  P  + WKLNT+  W    N GGIGWILRD  G +I A CR++     I  LE MA+ EGL++I +E       E    I +ESD LE ++LL     
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKE-------ERLETI-VESDCLELVNLLKGVDS

Query:  DLTEISFSID
        D TEI + ++
Subjt:  DLTEISFSID

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.7e-1544.12Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLTEISFS
        W  P  + WKLNTN  W    N GGIGWILRD  G +I A CR++     I  LE MA+ EGL++I +E      +ESD LE ++LL     D TEI + 
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLTEISFS

Query:  ID
        ++
Subjt:  ID

A0A6J1CQG0 uncharacterized protein LOC1110132163.1e-1341.05Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLT
        W+ PP + WKLNT+ +W +    GGIGWIL D  G ++ AG   +  + +I  LE M ++ GL+ IN + R    +ESD +E++ L+K  D DLT
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.2e-1244.83Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL
        W  P  + WKLNT+  W    N  GIGWILRD  G +I  GCR++     I  LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.2e-1244.83Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL
        W  P  + WKLNT+  W    N  GIGWILRD  G +I  GCR++     I  LE MA+ EGL++I +E      +ESD LE ++LL
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL

A0A6J1DSV1 uncharacterized protein LOC1110236089.1e-1341.82Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKE-------ERLETI-VESDCLELVNLLKGVDS
        W  P  + WKLNT+  W    N GGIGWILRD  G +I A CR++     I  LE MA+ EGL++I +E       E    I +ESD LE ++LL     
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKE-------ERLETI-VESDCLELVNLLKGVDS

Query:  DLTEISFSID
        D TEI + ++
Subjt:  DLTEISFSID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0734.07Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVD
        W  PP+   K NT+ TW     R GIGWILR+ +G ++  G R +     +   E  A+   + ++++      I ESD   LVNLL   D
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVD

AT4G29090.1 Ribonuclease H-like superfamily protein3.7e-0632.18Show/hide
Query:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL
        W  PPH   K NT+ TW     R GIGW+LR+  G +   G R +     +   E  A+   + S+++ +    I ESD   L+ +L
Subjt:  WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGACCACACCACCCCACCATAGATGGAAATTGAACACGAACACTACCTGGATGGACTCCCTGAATCGTGGTGGCATTGGCTGGATTCTTCGTGACTCTAATGGTTCGTT
GATTTCGGCTGGGTGTAGGCTTGTGTATCACAGATGTCAAATCAAGGTTTTGGAGGCAATGGCTGTGGTTGAAGGTCTGAAATCTATCAACAAGGAAGAAAGGTTAGAAA
CCATTGTTGAGTCGGACTGCCTTGAACTAGTTAATCTGCTGAAAGGGGTGGATTCCGACCTAACTGAGATTAGCTTTTCCATCGAC
mRNA sequenceShow/hide mRNA sequence
TGGACCACACCACCCCACCATAGATGGAAATTGAACACGAACACTACCTGGATGGACTCCCTGAATCGTGGTGGCATTGGCTGGATTCTTCGTGACTCTAATGGTTCGTT
GATTTCGGCTGGGTGTAGGCTTGTGTATCACAGATGTCAAATCAAGGTTTTGGAGGCAATGGCTGTGGTTGAAGGTCTGAAATCTATCAACAAGGAAGAAAGGTTAGAAA
CCATTGTTGAGTCGGACTGCCTTGAACTAGTTAATCTGCTGAAAGGGGTGGATTCCGACCTAACTGAGATTAGCTTTTCCATCGAC
Protein sequenceShow/hide protein sequence
WTTPPHHRWKLNTNTTWMDSLNRGGIGWILRDSNGSLISAGCRLVYHRCQIKVLEAMAVVEGLKSINKEERLETIVESDCLELVNLLKGVDSDLTEISFSID