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MS022082 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022082
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S2, chloroplastic
Genome locationscaffold47:619882..619962
RNA-Seq ExpressionMS022082
SyntenyMS022082
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR018130 - Ribosomal protein S2, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU95272.1 Rps2, partial [Humiria balsamifera]9.4e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
AFU95291.1 Rps2, partial [Schistostemon retusum]9.4e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
YP_009753078.1 ribosomal protein S2 [Corallocarpus boehmii]9.4e-0474.07Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNIYLEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
YP_009973478.1 ribosomal protein S2 [Oxalis corniculata]4.2e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
YP_010034587.1 ribosomal protein S2 [Aponogeton lakhonensis]9.4e-0474.07Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I +YWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
TrEMBL top hitse value%identityAlignment
A0A0Y0UQW7 30S ribosomal protein S2, chloroplastic2.0e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
A0A411JTJ5 Ribosomal protein S24.6e-0474.07Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNIYLEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
A0A6H0EVW6 30S ribosomal protein S2, chloroplastic4.6e-0474.07Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNIYLEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
A0A7G7YEL0 30S ribosomal protein S2, chloroplastic2.0e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
T1L6U5 30S ribosomal protein S2, chloroplastic2.0e-0477.78Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I KYWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
SwissProt top hitse value%identityAlignment
A1XGM7 30S ribosomal protein S2, chloroplastic3.6e-0674.07Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +I +YWNI LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
A4GGA8 30S ribosomal protein S2, chloroplastic8.0e-0670.37Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        + ++YWNI LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
Q09MI9 30S ribosomal protein S2, chloroplastic6.1e-0666.67Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNI+LEEM+EAG+HFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
Q0G9N0 30S ribosomal protein S2, chloroplastic4.7e-0670.37Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
Q4VZP4 30S ribosomal protein S2, chloroplastic4.7e-0670.37Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        +  +YWNI+LEEM+EAGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
Arabidopsis top hitse value%identityAlignment
ATCG00160.1 ribosomal protein S23.7e-0666.67Show/hide
Query:  LIEKYWNIYLEEMIEAGVHFGPGTRKF
        + ++YWNI LEEM+ AGVHFG GTRK+
Subjt:  LIEKYWNIYLEEMIEAGVHFGPGTRKF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATTGAAAAATATTGGAACATCTATTTGGAAGAGATGATAGAAGCAGGAGTTCATTTTGGTCCTGGTACTAGGAAATTT
mRNA sequenceShow/hide mRNA sequence
TTGATTGAAAAATATTGGAACATCTATTTGGAAGAGATGATAGAAGCAGGAGTTCATTTTGGTCCTGGTACTAGGAAATTT
Protein sequenceShow/hide protein sequence
LIEKYWNIYLEEMIEAGVHFGPGTRKF