; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022089 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022089
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-binding protein 28
Genome locationscaffold47:787923..788636
RNA-Seq ExpressionMS022089
SyntenyMS022089
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011721.1 RNA-binding protein 28, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-2992.86Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR +DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRG+GFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

XP_022135783.1 RNA-binding protein 28 isoform X1 [Momordica charantia]1.1e-32100Show/hide
Query:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
Subjt:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

XP_022135784.1 RNA-binding protein 28 isoform X2 [Momordica charantia]1.1e-32100Show/hide
Query:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
Subjt:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

XP_023511705.1 RNA-binding protein 28 [Cucurbita pepo subsp. pepo]3.4e-2992.86Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR +DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRG+GFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

XP_038888249.1 RNA-binding protein 28 [Benincasa hispida]8.9e-3094.29Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR++DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

TrEMBL top hitse value%identityAlignment
A0A6J1C2G5 RNA-binding protein 28 isoform X25.4e-33100Show/hide
Query:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
Subjt:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

A0A6J1C5V7 RNA-binding protein 28 isoform X15.4e-33100Show/hide
Query:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
Subjt:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

A0A6J1IDH9 RNA-binding protein 28 isoform X23.6e-2991.43Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR +DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GSTEHRG+GFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

A0A6J1IG31 RNA-binding protein 28 isoform X13.6e-2991.43Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR +DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GSTEHRG+GFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

A0A6J1IIK5 RNA-binding protein 28 isoform X33.6e-2991.43Show/hide
Query:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR +DGG KG AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQ+GSTEHRG+GFVQ
Subjt:  MGKNKRIRDGGGKG-AAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

SwissProt top hitse value%identityAlignment
O74400 Uncharacterized RNA-binding protein C4F6.146.0e-0542.55Show/hide
Query:  SKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV
        S +FV+NL +      L   FSDVGP++   +VT   + E+RG+GFV
Subjt:  SKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV

Q5R8K3 SRA stem-loop-interacting RNA-binding protein, mitochondrial7.9e-0544.44Show/hide
Query:  FVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        FV+ +P++  +SQL+E F+  G VRRC +   K +  HRG G+VQ
Subjt:  FVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

Q8CGC6 RNA-binding protein 289.0e-0960Show/hide
Query:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV
        +FV  LP S  + QLEE FS VGPV++CF+VT+KGS   RGFG+V
Subjt:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV

Q9GZT3 SRA stem-loop-interacting RNA-binding protein, mitochondrial7.9e-0544.44Show/hide
Query:  FVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        FV+ +P++  +SQL+E F+  G VRRC +   K +  HRG G+VQ
Subjt:  FVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

Q9NW13 RNA-binding protein 289.0e-0960Show/hide
Query:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV
        +FV  LP S  + QLEE FS VGPV++CF+VT+KGS   RGFG+V
Subjt:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFV

Arabidopsis top hitse value%identityAlignment
AT1G71800.1 cleavage stimulating factor 646.2e-0541.3Show/hide
Query:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        VFV N+PY  T  QL E   +VGPV    +VT + + + +G+GF +
Subjt:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

AT2G21440.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.7e-1862.32Show/hide
Query:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        MGKNKR R  G +     H  + V V  LPYS TN+QLEE FS+VGPVRRCF+VT KGS EHRGF FV+
Subjt:  MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

AT2G36660.1 poly(A) binding protein 78.1e-0545.65Show/hide
Query:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ
        VFVKNLP S TN+ L++ F   G +  C + T +   + RG+GFVQ
Subjt:  VFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQ

AT3G52380.1 chloroplast RNA-binding protein 334.7e-0539.58Show/hide
Query:  KVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL
        +++V NLPY+ T+S+L + F + G V    +V  K +   RGFGFV +
Subjt:  KVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL

AT4G24770.1 31-kDa RNA binding protein1.4e-0439.58Show/hide
Query:  KVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL
        +V+V NLP+   N +LE+ FS+ G V    +V  + +   RGFGFV +
Subjt:  KVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGAACAAGAGAATTAGAGACGGCGGCGGGAAGGGAGCCGCCGGCGACCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCGCA
GCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTTCAACTGAGCACCGCGGTTTTGGATTTGTGCAATTG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGAACAAGAGAATTAGAGACGGCGGCGGGAAGGGAGCCGCCGGCGACCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCGCA
GCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTTCAACTGAGCACCGCGGTTTTGGATTTGTGCAATTG
Protein sequenceShow/hide protein sequence
MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL