; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022098 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022098
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationscaffold47:853080..853637
RNA-Seq ExpressionMS022098
SyntenyMS022098
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]1.8e-6168.75Show/hide
Query:  MESLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQ
        ME++SG+SSSSS+EFVF+DDF++EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL EDRID  +    +L  
Subjt:  MESLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQ

Query:  DLEDGFAYGYDGNRCDYEGAEEDEADDD-GDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
          EDGFAYGYD      +  EEDE DDD  DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DLEDGFAYGYDGNRCDYEGAEEDEADDD-GDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]1.2e-6067.88Show/hide
Query:  MESLSG--ASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYL
        ME++SG  +SSSSS+EFVF+DDF++EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL EDRID  +    +L
Subjt:  MESLSG--ASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYL

Query:  LQDLEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGY+      +  EEDE DDD DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  LQDLEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_022135642.1 uncharacterized protein LOC111007551 [Momordica charantia]2.6e-9798.41Show/hide
Query:  MESLSGA---SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL
        MESLSGA   SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL
Subjt:  MESLSGA---SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL

Query:  EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_022969470.1 uncharacterized protein LOC111468462 [Cucurbita maxima]8.9e-6169.9Show/hide
Query:  MESLSGA-----SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GV
        ME++SGA     SSSSSVEF F+DDF++EFV++VERLSNWEFL+ASDA  EMDG+ G+ EG +  V  R+P DL E +SPV  VPISLAEDRI D +  V
Subjt:  MESLSGA-----SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GV

Query:  YLLQD-LEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        Y LQ+  EDGFAYGY+    D    ++ + DDD DE DLDDELVPWSVS KLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  YLLQD-LEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]1.4e-6170.92Show/hide
Query:  MESLSGA--SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GVYLL
        ME++SGA  SSSSSVEF F+DDF++EFV++VERLSNWEFL+ASDA  EMDG+ G+ EG +  V  R+P DLRE +SPV  VPISLAEDRI D +  VY L
Subjt:  MESLSGA--SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GVYLL

Query:  QD-LEDGFAYGY---DGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        Q+  EDGFAYGY   + +  D +  ++D+ DDD DE DLDDELVPWSVS KLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  QD-LEDGFAYGY---DGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein5.6e-6167.88Show/hide
Query:  MESLSG--ASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYL
        ME++SG  +SSSSS+EFVF+DDF++EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL EDRID  +    +L
Subjt:  MESLSG--ASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYL

Query:  LQDLEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGY+      +  EEDE DDD DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  LQDLEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903561.8e-5967.89Show/hide
Query:  SLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQDL
        S S +SSSSS+EFVF+DDF++EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL EDRID  +    +L    
Subjt:  SLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQDL

Query:  EDGFAYGYDGNRCDYEGAEEDEADD-DGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        EDGFAYGYD      +  EEDE DD + DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  EDGFAYGYDGNRCDYEGAEEDEADD-DGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like8.7e-6268.75Show/hide
Query:  MESLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQ
        ME++SG+SSSSS+EFVF+DDF++EFV+++ERLSNWE LDA DA+ +  G+G   +G + SVD  V  DLRE +SPV AVPISL EDRID  +    +L  
Subjt:  MESLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDG---EGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV--GVYLLQ

Query:  DLEDGFAYGYDGNRCDYEGAEEDEADDD-GDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
          EDGFAYGYD      +  EEDE DDD  DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  DLEDGFAYGYDGNRCDYEGAEEDEADDD-GDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1C3A5 uncharacterized protein LOC1110075511.3e-9798.41Show/hide
Query:  MESLSGA---SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL
        MESLSGA   SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL
Subjt:  MESLSGA---SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDL

Query:  EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  EDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I004 uncharacterized protein LOC1114684624.3e-6169.9Show/hide
Query:  MESLSGA-----SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GV
        ME++SGA     SSSSSVEF F+DDF++EFV++VERLSNWEFL+ASDA  EMDG+ G+ EG +  V  R+P DL E +SPV  VPISLAEDRI D +  V
Subjt:  MESLSGA-----SSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDA--EMDGS-GDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRV-GV

Query:  YLLQD-LEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
        Y LQ+  EDGFAYGY+    D    ++ + DDD DE DLDDELVPWSVS KLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  YLLQD-LEDGFAYGYDGNRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein2.6e-1840.32Show/hide
Query:  VDEVERLSNWEFLDASDAEMDGSGDGEGVDS-SVDGRVPADLRERLSPVA------AVPISLAEDRI-----DDRVGVYLLQDLEDGFAYGYDGNRCDYE
        +D+   L  WE ++ SD E   S D   VDS S D  +  D    ++P         +PI+   D       DD VG  +++D  D    G+   R  + 
Subjt:  VDEVERLSNWEFLDASDAEMDGSGDGEGVDS-SVDGRVPADLRERLSPVA------AVPISLAEDRI-----DDRVGVYLLQDLEDGFAYGYDGNRCDYE

Query:  GAEE---------DEADDDGDE-------YDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLK
        G            D  +DDG+E       YDLD+ELVP SVS K+GRQRMRKLGKR   ++Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GAEE---------DEADDDGDE-------YDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein5.6e-0542.31Show/hide
Query:  NRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFT--KPGCVRGKHGLGLK
        NR  Y+  EED+  D  D+ D D ELV          QR+RK GKR F +    K+  + ++  KPGCV GKHGL +K
Subjt:  NRCDYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFT--KPGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCCTTTCTGGAGCATCATCATCATCATCGGTGGAATTTGTGTTTTTCGATGATTTCGATTTCGAATTTGTTGATGAAGTCGAACGCCTCTCGAACTGGGAGTT
CCTCGATGCTTCCGATGCGGAAATGGACGGAAGCGGAGATGGAGAGGGGGTAGACAGTAGCGTCGACGGCAGAGTCCCTGCGGATCTTCGGGAAAGGCTTTCTCCTGTTG
CGGCGGTGCCGATTTCACTCGCGGAGGACCGAATCGACGATCGTGTAGGGGTTTATTTGCTTCAGGATCTGGAAGACGGATTCGCGTACGGTTACGACGGTAACCGCTGC
GATTACGAGGGCGCGGAGGAGGATGAAGCCGACGATGATGGAGATGAGTACGATTTGGACGACGAACTCGTCCCGTGGTCTGTCAGTGGGAAACTCGGACGGCAGAGGAT
GAGAAAATTGGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTCTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAGC
ACAGTTAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGCCTTTCTGGAGCATCATCATCATCATCGGTGGAATTTGTGTTTTTCGATGATTTCGATTTCGAATTTGTTGATGAAGTCGAACGCCTCTCGAACTGGGAGTT
CCTCGATGCTTCCGATGCGGAAATGGACGGAAGCGGAGATGGAGAGGGGGTAGACAGTAGCGTCGACGGCAGAGTCCCTGCGGATCTTCGGGAAAGGCTTTCTCCTGTTG
CGGCGGTGCCGATTTCACTCGCGGAGGACCGAATCGACGATCGTGTAGGGGTTTATTTGCTTCAGGATCTGGAAGACGGATTCGCGTACGGTTACGACGGTAACCGCTGC
GATTACGAGGGCGCGGAGGAGGATGAAGCCGACGATGATGGAGATGAGTACGATTTGGACGACGAACTCGTCCCGTGGTCTGTCAGTGGGAAACTCGGACGGCAGAGGAT
GAGAAAATTGGGGAAAAGAGGTTTTACGAGGATGTATAACTCGAAGAGATCGCCGTTTCTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAGC
ACAGTTAT
Protein sequenceShow/hide protein sequence
MESLSGASSSSSVEFVFFDDFDFEFVDEVERLSNWEFLDASDAEMDGSGDGEGVDSSVDGRVPADLRERLSPVAAVPISLAEDRIDDRVGVYLLQDLEDGFAYGYDGNRC
DYEGAEEDEADDDGDEYDLDDELVPWSVSGKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSY