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MS022103 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022103
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein MEI2-like 6
Genome locationscaffold47:905319..905650
RNA-Seq ExpressionMS022103
SyntenyMS022103
Gene Ontology termsGO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR007201 - Mei2-like, C-terminal RNA recognition motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5448890.1 hypothetical protein F2P56_029385 [Juglans regia]7.4e-2269.74Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT     WKF  AA+NQ+W+L +S+K+R+IA ARLQG EEL+RHFE+MGFPCE++EVLPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

XP_022135880.1 protein MEI2-like 6 [Momordica charantia]1.2e-3597.37Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCET EVLPVRF PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

XP_024932718.1 protein MEI2-like 1 [Ziziphus jujuba]7.9e-2472.37Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT A  AWKF    +NQTWD   SSK+R IARARLQGK EL++HFE MGFPCE+EEVLPV +CP RDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

XP_034229450.1 uncharacterized protein LOC117638428 [Prunus dulcis]7.4e-2264.47Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT+    WKF  AAD+Q W+L +S+K+R+IA A++QGK+ L+RHFE MGFPCE+E+VLP+ F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

XP_041012693.1 protein terminal ear1 homolog [Juglans microcarpa x Juglans regia]4.3e-2269.74Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT     WKF  AA+NQ+W+L +S+K+R+IA ARLQG EEL+RHFE+MGFPCE++EVLPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

TrEMBL top hitse value%identityAlignment
A0A2I4E7E5 protein terminal ear1 homolog3.6e-2269.74Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT     WKF  AA+NQ+W+L +S+K+R+IA ARLQG EEL+RHFE+MGFPCE++EVLPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

A0A314UCQ4 RRM domain-containing protein3.6e-2265.79Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT+    WKF  AA  Q W+L +S+K+R+IA A++QGK+EL+RHFE MGFPCE+E+VLPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

A0A5E4FST5 PREDICTED: terminal3.6e-2264.47Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT+    WKF  AAD+Q W+L +S+K+R+IA A++QGK+ L+RHFE MGFPCE+E+VLP+ F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

A0A6J1C2A5 protein MEI2-like 65.7e-3697.37Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCET EVLPVRF PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

A0A6P6GF17 protein MEI2-like 13.8e-2472.37Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT A  AWKF    +NQTWD   SSK+R IARARLQGK EL++HFE MGFPCE+EEVLPV +CP RDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

SwissProt top hitse value%identityAlignment
A2WY46 Protein terminal ear1 homolog5.9e-1446.05Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GY FVN T+   A +   A   Q W++ NS K+ ++  AR+QG + L  HF+N  FPC+++E LPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

O65001 Protein terminal ear15.0e-1344.74Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GY FVN T+     +   A   Q W++ NS K+ ++  AR+QG E L  HF+N  FPC+++E LPV F P RDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

Q0JGS5 Protein terminal ear1 homolog5.9e-1446.05Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GY FVN T+   A +   A   Q W++ NS K+ ++  AR+QG + L  HF+N  FPC+++E LPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

Q652K6 Protein MEI2-like 61.3e-1348.68Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVN TTA  A + +A   +  WD   S KV  +  A +QG +  + HF    FPC T+E LPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

Q6ET49 Protein MEI2-like 76.1e-1146.84Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTW--DLCNSSKVRRIARARLQGKEELLRHF-ENMGFPCETEEVLPVRFCPPRDG
        N GYAFVNFTTA  A   + A     W     +S K+  I  AR+QGK+ L+RHF     + C+T+E LP  F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTW--DLCNSSKVRRIARARLQGKEELLRHF-ENMGFPCETEEVLPVRFCPPRDG

Arabidopsis top hitse value%identityAlignment
AT1G37140.1 MEI2 C-terminal RRM only like 11.8e-1346.75Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWD-LCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GYAFVNFT++  A +F+   +N +WD +    K+  I  A+ QGKEEL RHF N  F C T++ LPV   PP +G
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWD-LCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

AT1G37140.2 MEI2 C-terminal RRM only like 11.8e-1346.75Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWD-LCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GYAFVNFT++  A +F+   +N +WD +    K+  I  A+ QGKEEL RHF N  F C T++ LPV   PP +G
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWD-LCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

AT1G67770.1 terminal EAR1-like 26.3e-1141.03Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTW-DLCNSSKVRRIARARLQGKEELLRHFENMGFP-CETEEVLPVRFCPPRDG
        N GY FVN T+    W+   +  NQ W D   + K+  +  AR+QG E L  HF+N+     E +E +PV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTW-DLCNSSKVRRIARARLQGKEELLRHFENMGFP-CETEEVLPVRFCPPRDG

AT3G26120.1 terminal EAR1-like 12.6e-1751.32Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        N GY FVN T+   AW+F  A   Q W++ NS K+ +I  AR+QG E+L  HF++  FPCE E  LPV F PPRDG
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG

AT5G07930.1 MEI2 C-terminal RRM only like 21.5e-0946.05Show/hide
Query:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG
        NKGYAFVNFT A    KFKAA +N+ W    S K   I  AR+Q   EL++ F++M +P   E    V F P R G
Subjt:  NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACAAGGGATACGCGTTCGTGAACTTCACGACGGCGGGCGGGGCGTGGAAGTTCAAGGCCGCCGCCGACAACCAAACGTGGGATCTCTGCAACTCCTCCAAAGTCCGGCG
AATCGCACGTGCCAGGCTTCAAGGGAAGGAGGAGCTGCTGCGGCACTTCGAGAACATGGGGTTTCCGTGCGAGACGGAGGAGGTTTTGCCAGTGAGGTTCTGCCCGCCGC
GCGACGGC
mRNA sequenceShow/hide mRNA sequence
AACAAGGGATACGCGTTCGTGAACTTCACGACGGCGGGCGGGGCGTGGAAGTTCAAGGCCGCCGCCGACAACCAAACGTGGGATCTCTGCAACTCCTCCAAAGTCCGGCG
AATCGCACGTGCCAGGCTTCAAGGGAAGGAGGAGCTGCTGCGGCACTTCGAGAACATGGGGTTTCCGTGCGAGACGGAGGAGGTTTTGCCAGTGAGGTTCTGCCCGCCGC
GCGACGGC
Protein sequenceShow/hide protein sequence
NKGYAFVNFTTAGGAWKFKAAADNQTWDLCNSSKVRRIARARLQGKEELLRHFENMGFPCETEEVLPVRFCPPRDG