; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022109 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022109
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein GIS2
Genome locationscaffold47:938091..939914
RNA-Seq ExpressionMS022109
SyntenyMS022109
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148537.1 zinc finger protein GIS2 [Cucumis sativus]6.4e-15095.02Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R GSG GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+R+PRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_008448055.1 PREDICTED: zinc finger protein GIS2 [Cucumis melo]1.3e-15095.79Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R GSG GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022136056.1 zinc finger protein GIS2 [Momordica charantia]1.1e-157100Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022933286.1 zinc finger protein GIS2-like [Cucurbita moschata]2.9e-15094.64Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+A+SC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L +R DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG GGGYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_038887879.1 zinc finger protein GIS2 [Benincasa hispida]2.2e-15095.02Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RGG+  GYRDVVCRNCQQLGHMSRDCMGPL+ICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

TrEMBL top hitse value%identityAlignment
A0A0A0K138 Uncharacterized protein3.1e-15095.02Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R GSG GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+R+PRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A1S3BIU7 zinc finger protein GIS26.3e-15195.79Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGI SGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S R GSG GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1C2F8 zinc finger protein GIS25.3e-158100Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1EYM8 zinc finger protein GIS2-like1.4e-15094.64Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+A+SC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L +R DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG GGGYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1I6P4 zinc finger protein GIS2-like1.2e-14995.02Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+A+SC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG
        EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGIGSGGG
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGG

Query:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG GGGYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

SwissProt top hitse value%identityAlignment
O42395 Cellular nucleic acid-binding protein1.5e-2136.09Show/hide
Query:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMANSC-----PNEGICHTCGKAGHRA
        N C  C R GH+ARECP                          IC+ CG  GH+A +C  +    C+NC   GH+A  C       E  C+ CGK GH A
Subjt:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMANSC-----PNEGICHTCGKAGHRA

Query:  RECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        R+C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  RECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

P36627 Cellular nucleic acid-binding protein homolog4.5e-2132.11Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHMANSC---PNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
        C+NCG  GH A ECT  S+C+NC + GH A+ C     E  C+ CG AGH  R+C + P P      C  C + GHIA DC      +  R  GH     
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHMANSC---PNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC

Query:  PNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCM--GPLMICHNCGGRGHLAYECPS
         ++  C  C   GH AR C                               V C +C ++GH S +C       +C+ C   GH+A  C S
Subjt:  PNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCM--GPLMICHNCGGRGHLAYECPS

P53849 Zinc finger protein GIS26.7e-2535.57Show/hide
Query:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAPPLPPGDLRL-CNNCYKQGHIA
        C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GH+ + C  +  C  C + GH +REC  P       ++ C  C    H+A
Subjt:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAPPLPPGDLRL-CNNCYKQGHIA

Query:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS
         DC  E       C  C + GH++RDC ND +C  CN +GH+++ CPK+
Subjt:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS

Q04832 DNA-binding protein HEXBP1.3e-2830.18Show/hide
Query:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMANSCPNEG--------ICHTCGKAGHRARECT----
        C+NC + GH+ARECP            C  CG  GH++ EC  ++         C+ C E GHM+  CPN           C+ CG+ GH +R+C     
Subjt:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMANSCPNEG--------ICHTCGKAGHRARECT----

Query:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNI
                      A     GD R C  C   GHI+ DC N         ++ C  C   GH++RDCPN         D  C  C  SGH++R+CP +  
Subjt:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNI

Query:  LSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCM-----------GPLMICHNCGGRGHLAYECPS
                         G +G G  D  C  C + GH+SR+C            G    C+ CG  GH++ +CPS
Subjt:  LSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCM-----------GPLMICHNCGGRGHLAYECPS

Q3T0Q6 Cellular nucleic acid-binding protein7.0e-2236.53Show/hide
Query:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHMANSC-----PNEGICHTCGKAGHRARE
        N C  C R GH+ARECP                         IC+ CG  GH+A +C   +  C+NC   GH+A  C       E  C+ CGK GH AR+
Subjt:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHMANSC-----PNEGICHTCGKAGHRARE

Query:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

Arabidopsis top hitse value%identityAlignment
AT1G75560.1 zinc knuckle (CCHC-type) family protein5.9e-9362.5Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        S SRSR R RSRSP DR++RS+R +Y DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+A++C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIG-SGG
        EGICH+CGK+GHRAR+C+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +  S+  DRG     G
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIG-SGG

Query:  GSVRGGSGGGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY
        G  RGG               L  MSRD  G   ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  GSVRGGSGGGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT1G75560.2 zinc knuckle (CCHC-type) family protein5.9e-9362.5Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN
        S SRSR R RSRSP DR++RS+R +Y DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+A++C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPN

Query:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIG-SGG
        EGICH+CGK+GHRAR+C+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +  S+  DRG     G
Subjt:  EGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIG-SGG

Query:  GSVRGGSGGGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY
        G  RGG               L  MSRD  G   ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  GSVRGGSGGGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT2G17870.1 cold shock domain protein 31.4e-1430.22Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTA-----PPLPPGDLRLCNNCYKQGHIAADC----------------T
        C NCG  GH+A +C   S        G        EG C+ CG  GH AR+C            G  R C +C + GH+A DC                +
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTA-----PPLPPGDLRLCNNCYKQGHIAADC----------------T

Query:  NEKACNNCRKTGHLARDCPND---------PICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDC-------
            C  C   GH ARDC  +           C  C   GH+A+ C             I SGGG      GGG     C  C   GH++RDC       
Subjt:  NEKACNNCRKTGHLARDCPND---------PICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDC-------

Query:  ---MGPLMICHNCGGRGHLAYECPS
            G    C  CG  GH A EC S
Subjt:  ---MGPLMICHNCGGRGHLAYECPS

AT3G43590.1 zinc knuckle (CCHC-type) family protein2.7e-1326.13Show/hide
Query:  CHNCGLPGHIASECTT----KSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR
        C++CG  GH +  C T    +  C+ C    H A  C     C+ C K GHRA++C           +C  C   GH    C  E +        C  C+
Subjt:  CHNCGLPGHIASECTT----KSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR

Query:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMI-----------CHN
          GHL    P + +     C  C   GH    C +    S+  D        + R  S        C  C + GH +R+C     I           C+ 
Subjt:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMI-----------CHN

Query:  CGGRGHLAYECPSGRFMERYPR
        C G GH A ECP+   + +  R
Subjt:  CGGRGHLAYECPSGRFMERYPR

AT4G36020.1 cold shock domain protein 12.3e-2030.21Show/hide
Query:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHMANSCPNEGI-------------CHTCGKAGHRARECT
        +L K     G+ AR     + C+NCG  GHI+ +C                  C+NC + GH A  C + G              C+TCG  GH AR+CT
Subjt:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHMANSCPNEGI-------------CHTCGKAGHRARECT

Query:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNILSDRVDR
           +  GD R         C  C   GH A DCT + A             C +C   GH+ARDC         C  C  SGH+AR C +          
Subjt:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNILSDRVDR

Query:  GIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDC
                   GSGGG  D  C  C + GH +R+C
Subjt:  GIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGATAGCAGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTGCATATCGTGATGCACCGTACAGGAGAGAGTC
GCGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCACGAGAATGCCCCAATGTGGCAATCTGTCACAATTGTGGTCTCCCTGGGC
ATATTGCTTCAGAGTGCACAACGAAATCACTATGTTGGAATTGTCGAGAACCAGGTCACATGGCAAATAGCTGTCCCAATGAAGGCATCTGCCACACCTGTGGTAAGGCA
GGACATCGGGCTAGGGAATGCACCGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTGTGCAATAATTGCTATAAGCAGGGTCATATAGCAGCTGACTGTACTAACGAGAA
GGCCTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAATGACCCAATTTGCAACTTGTGTAATGTATCCGGGCATGTGGCCAGACAGTGTCCAAAAT
CCAACATCCTCAGTGACCGGGTAGACCGGGGCATTGGCAGTGGCGGTGGCAGTGTGCGTGGCGGCAGCGGTGGTGGTTATCGGGACGTTGTGTGCAGGAACTGCCAGCAG
CTTGGCCATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGCCATAACTGCGGGGGACGCGGGCACCTAGCGTACGAATGCCCTTCTGGTCGGTTTATGGAGCGCTA
TCCCAGGAGGTAC
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGATAGCAGGAGTCGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTGCATATCGTGATGCACCGTACAGGAGAGAGTC
GCGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCACGAGAATGCCCCAATGTGGCAATCTGTCACAATTGTGGTCTCCCTGGGC
ATATTGCTTCAGAGTGCACAACGAAATCACTATGTTGGAATTGTCGAGAACCAGGTCACATGGCAAATAGCTGTCCCAATGAAGGCATCTGCCACACCTGTGGTAAGGCA
GGACATCGGGCTAGGGAATGCACCGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTGTGCAATAATTGCTATAAGCAGGGTCATATAGCAGCTGACTGTACTAACGAGAA
GGCCTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAATGACCCAATTTGCAACTTGTGTAATGTATCCGGGCATGTGGCCAGACAGTGTCCAAAAT
CCAACATCCTCAGTGACCGGGTAGACCGGGGCATTGGCAGTGGCGGTGGCAGTGTGCGTGGCGGCAGCGGTGGTGGTTATCGGGACGTTGTGTGCAGGAACTGCCAGCAG
CTTGGCCATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGCCATAACTGCGGGGGACGCGGGCACCTAGCGTACGAATGCCCTTCTGGTCGGTTTATGGAGCGCTA
TCCCAGGAGGTAC
Protein sequenceShow/hide protein sequence
MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPNEGICHTCGKA
GHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQ
LGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY