CuGenDBv2

Gene ID	MS022136
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribosomal protein L16
Genome location	scaffold47:1179599..1179850
RNA-Seq Expression	MS022136
Synteny	MS022136
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR020798 - Ribosomal protein L16, conserved site IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF9660759.1 hypothetical protein SADUNF_SadunfMtG0007400 [Salix dunnii]

8.7e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

KAG6736870.1 hypothetical protein POTOM_060208 [Populus tomentosa]

8.7e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

KAG6746851.1 hypothetical protein POTOM_049222 [Populus tomentosa]

8.7e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

YP_009230369.1 ribosomal protein L16, partial [Salix suchowensis]

8.7e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

YP_009745364.1 ribosomal protein L16 [Salix paraflabellaris]

8.7e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

TrEMBL top hits

e value

%identity

Alignment

A0A109WWC5 Ribosomal protein L16 (Fragment)

4.2e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

A0A140HPA9 Ribosomal protein L16

4.2e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

A0A451FPI4 Ribosomal protein L16 (Fragment)

4.2e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

A0A6N2KSZ4 Ribosomal_L16 domain-containing protein

4.2e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

A0A7G9ISX8 Ribosomal protein L16

4.2e-40

96.43

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTE+RMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

SwissProt top hits

e value

%identity

Alignment

P27927 60S ribosomal protein L16, mitochondrial

1.0e-35

83.7

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRG +PDGTQLGFGRYGTKS RAGRLSYRAIEAARRA I        GQFRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

P46801 60S ribosomal protein L16, mitochondrial

2.9e-38

85.87

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGC+PDGTQLGFGRYGTKSCRAGRLSYRAIEAARRA I        GQFRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

P49389 60S ribosomal protein L16, mitochondrial

3.8e-38

84.95

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII---------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGT+LGFGRYGTKSCRAGRLSYRAIEAARRA I         GQFRRN KIWVRVLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII---------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Q04715 60S ribosomal protein L16, mitochondrial

5.3e-40

88.04

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII        GQFRRNGKIWVRVLAD+PITGKPTEVRMGRGKGNPTGWIA VS G
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Q95747 60S ribosomal protein L16, mitochondrial

5.0e-38

84.78

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGT+LGFGRYG KSC+AG LSYRAIEAARRAII        GQFRRNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

2.9e-09

41.43

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Query:  RYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        RY  ++     ++ R IEA RRA+     R   + V + AD P+T +P E RMGRGKG P  W+A V  G
Subjt:  RYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

ATCG00790.1 ribosomal protein L16

9.3e-16

44.58

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Query:  RGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        +G    G ++ FGRY  ++     ++ R IEA RRA+    RR GKIWVR+  D P+T +P E RMG GKG+P  W+A V  G
Subjt:  RGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

ATMG00080.1 ribosomal protein L16

8.4e-41

86.96

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Query:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG
        SRGCKPDGT+LGFGRYGTKSC+AGRLSYRAIEAARRAII        GQFRRNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Subjt:  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Sequences

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CDS sequence

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AGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGC
TATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATC
CTACGGGTTGGATTGCTCATGTGTCCACGGGA

mRNA sequence

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Protein sequence

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SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

MS022136 (gene) of Bitter gourd (TR) v1 genome