CuGenDBv2

Gene ID	MS022155
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L2
Genome location	scaffold47:1278397..1278537
RNA-Seq Expression	MS022155
Synteny	MS022155
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR008991 - Translation protein SH3-like domain superfamily IPR014722 - Ribosomal protein L2, domain 2

Homology

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GenBank top hits

e value

%identity

Alignment

QKO27855.1 ribosomal protein L2, partial [Nietneria paniculata]

6.0e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

QKO27873.1 ribosomal protein L2, partial [Aletris obovata]

6.0e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

XP_019703146.1 uncharacterized protein LOC109505206 [Elaeis guineensis]

6.0e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

YP_005090371.1 ribosomal protein L2 [Phoenix dactylifera]

6.0e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

YP_009315986.1 ribosomal protein L2 [Cocos nucifera]

6.0e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

TrEMBL top hits

e value

%identity

Alignment

A0A2Z2CEI4 Ribosomal protein L2

2.9e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

A0A6J0PD90 uncharacterized protein LOC109505206

2.9e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

A0A7G3UVB0 Ribosomal protein L2

2.9e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

A0A7G3V3K7 Ribosomal protein L2

2.9e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

G9HNT1 Ribosomal protein L2

2.9e-14

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        RYEILDLNSK+GNCIP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

SwissProt top hits

e value

%identity

Alignment

A4J114 50S ribosomal protein L2

1.2e-04

43.24

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Query:  DLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLART
        D + K+GNC+P  +I +GT VH+I+ +PG  A++ R+
Subjt:  DLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLART

P0C8K6 60S ribosomal protein L2, mitochondrial

4.3e-15

75.56

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        R+EILDLNSK+GN IP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

P26859 60S ribosomal protein L2, mitochondrial

1.1e-07

51.06

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Query:  ETRYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        E +Y +      +GNCIP A I IGTWVH+I+ +PGQ AKL R   T
Subjt:  ETRYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

P92812 60S ribosomal protein L2, mitochondrial

4.3e-15

75.56

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        R+EILDLNSK+GN IP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

Q2F969 60S ribosomal protein L2, mitochondrial

4.3e-15

75.56

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Query:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        R+EILDLNSK+GN IP ADI +GTWVHDI+CHPGQ AKLAR   T
Subjt:  RYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

Arabidopsis top hits

e value

%identity

Alignment

AT2G44065.1 Ribosomal protein L2 family

8.4e-06

43.9

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Query:  LDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        +D+NS IG+ +P   + IGT +H+I+ +PGQ AK+ R   T
Subjt:  LDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

AT2G44065.2 Ribosomal protein L2 family

8.4e-06

43.9

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Query:  LDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET
        +D+NS IG+ +P   + IGT +H+I+ +PGQ AK+ R   T
Subjt:  LDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

Sequences

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CDS sequence

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GAAACTAGATACGAGATACTTGATCTAAATTCGAAAATAGGAAATTGCATACCATTCGCTGATATACATATAGGAACATGGGTACATGATATAAAATGTCATCCAGGTCA
AAGCGCAAAGTTGGCTCGCACTACAGAAACT

mRNA sequence

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GAAACTAGATACGAGATACTTGATCTAAATTCGAAAATAGGAAATTGCATACCATTCGCTGATATACATATAGGAACATGGGTACATGATATAAAATGTCATCCAGGTCA
AAGCGCAAAGTTGGCTCGCACTACAGAAACT

Protein sequence

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ETRYEILDLNSKIGNCIPFADIHIGTWVHDIKCHPGQSAKLARTTET

MS022155 (gene) of Bitter gourd (TR) v1 genome