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MS022172 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022172
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontrafficking protein particle complex subunit 2-like protein
Genome locationscaffold47:1406394..1409158
RNA-Seq ExpressionMS022172
SyntenyMS022172
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily
IPR044760 - Trafficking protein particle complex subunit 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589019.1 Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6796.24Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

XP_004144858.1 trafficking protein particle complex subunit 2-like protein [Cucumis sativus]9.8e-6896.99Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

XP_022136317.1 trafficking protein particle complex subunit 2-like protein [Momordica charantia]1.2e-68100Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

XP_022928280.1 trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]2.2e-6796.24Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

XP_031127945.1 trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]1.2e-6594.7Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNP+KSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA
        SNPFHVPGKKITS+TFAESVSTIVKSFG SSA
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA

TrEMBL top hitse value%identityAlignment
A0A0A0K4Q0 Uncharacterized protein4.8e-6896.99Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

A0A1S3BJH9 trafficking protein particle complex subunit 2-like protein4.8e-6896.99Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRSFFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

A0A6J1C584 trafficking protein particle complex subunit 2-like protein5.6e-69100Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

A0A6J1ERA2 Trafficking protein particle complex subunit1.1e-6796.24Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

A0A6J1JPT4 Trafficking protein particle complex subunit1.1e-6796.24Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV
        SNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV

SwissProt top hitse value%identityAlignment
B2RYU6 Trafficking protein particle complex subunit 2-like protein4.6e-2846.09Show/hide
Query:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY
        +K+N PLYI+S T  ++ LK H++VH SLDV++E+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++RS FR+ H +Y
Subjt:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY

Query:  VDAVSNPFHVPGKKITSKTFAESVSTIV
         D + NPF+ PG +I S+ F   V++++
Subjt:  VDAVSNPFHVPGKKITSKTFAESVSTIV

B5XGE7 Trafficking protein particle complex subunit 2-like protein6.1e-2846.88Show/hide
Query:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY
        +K+N PLYI+S     + LK H+ VH SLDV+EE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++RS FR+ H ++
Subjt:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY

Query:  VDAVSNPFHVPGKKITSKTFAESVSTIV
         D + NPF+ PG  I SK F   VS ++
Subjt:  VDAVSNPFHVPGKKITSKTFAESVSTIV

Q54CU7 Trafficking protein particle complex subunit 2-like protein3.4e-3148.85Show/hide
Query:  KQNNPLYIQSFTEA---DDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDL-DVRDADVRSFFRRFHAA
        K NNPL+IQ F+ +   ++ LKLH+IVHCSLD+IE++  + +K     ++ +LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    
Subjt:  KQNNPLYIQSFTEA---DDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDL-DVRDADVRSFFRRFHAA

Query:  YVDAVSNPFHVPGKKITSKTFAESVSTIVKS
        +++  SNPF+ P  K+ SK F + V+ +V S
Subjt:  YVDAVSNPFHVPGKKITSKTFAESVSTIVKS

Q5M8X5 Trafficking protein particle complex subunit 2-like protein3.6e-2846.09Show/hide
Query:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY
        +K+N PLYI+S T  ++ LK H+ VH SLDV++E+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++RS FR+ H +Y
Subjt:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY

Query:  VDAVSNPFHVPGKKITSKTFAESVSTIV
         D + NPF+ PG  I S+ F  +V++++
Subjt:  VDAVSNPFHVPGKKITSKTFAESVSTIV

Q9JME7 Trafficking protein particle complex subunit 2-like protein6.1e-2846.09Show/hide
Query:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY
        +K+N PLYI+S T  +  LK H++VH SLDV++E+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++RS FR+ H +Y
Subjt:  SKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVV--TTDLDVRDADVRSFFRRFHAAY

Query:  VDAVSNPFHVPGKKITSKTFAESVSTIV
         D + NPF+ PG +I S+ F   V++++
Subjt:  VDAVSNPFHVPGKKITSKTFAESVSTIV

Arabidopsis top hitse value%identityAlignment
AT2G20930.1 SNARE-like superfamily protein2.0e-6387.69Show/hide
Query:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
        QNNPLYIQSFT+ADDALKLHHIVHCSLDVIEERVNNP+KSG TLNE FLGLLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVRSFFR+FHAAYVDAV
Subjt:  QNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV

Query:  SNPFHVPGKKITSKTFAESVSTIVKSFGFS
        SNPFHVPGKKITS+TFA++VS IV S+G +
Subjt:  SNPFHVPGKKITSKTFAESVSTIVKSFGFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATCCTTTTTCGATTCGGCCGGAGCAAACAGAACAACCCGCTGTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCATCACATTGTCCATTGTTCGCT
GGATGTCATCGAAGAGCGAGTGAACAATCCGAGAAAATCTGGACCAACCTTGAACGAGACCTTTCTCGGTCTTCTTTATCCGACTGAAAATTACAAAGTGTATGGCTATT
TGACTAATACCAAAGTGAAGTTTATTGTGGTGACCACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTT
TCAAATCCATTTCACGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATCGTCAAGTCGTTTGGGTTCAGTTCAGCTGTT
mRNA sequenceShow/hide mRNA sequence
GTGATCCTTTTTCGATTCGGCCGGAGCAAACAGAACAACCCGCTGTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCATCACATTGTCCATTGTTCGCT
GGATGTCATCGAAGAGCGAGTGAACAATCCGAGAAAATCTGGACCAACCTTGAACGAGACCTTTCTCGGTCTTCTTTATCCGACTGAAAATTACAAAGTGTATGGCTATT
TGACTAATACCAAAGTGAAGTTTATTGTGGTGACCACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTTTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTT
TCAAATCCATTTCACGTGCCAGGTAAGAAAATTACTTCCAAAACTTTTGCAGAAAGTGTGAGCACCATCGTCAAGTCGTTTGGGTTCAGTTCAGCTGTT
Protein sequenceShow/hide protein sequence
VILFRFGRSKQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAV
SNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV