; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022188 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022188
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDDB1- and CUL4-associated factor 8
Genome locationscaffold47:1518510..1518848
RNA-Seq ExpressionMS022188
SyntenyMS022188
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0080008 - Cul4-RING E3 ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR045151 - DDB1- and CUL4-associated factor 8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040313.1 DDB1- and CUL4-associated factor 8 [Cucumis melo var. makuwa]7.6e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

TYK23393.1 DDB1- and CUL4-associated factor 8 [Cucumis melo var. makuwa]7.6e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

XP_004144864.1 DDB1- and CUL4-associated factor 8 [Cucumis sativus]1.2e-5590.27Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNPV P+S+SSD+SEMGAENV++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGG+LIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

XP_008447917.1 PREDICTED: DDB1- and CUL4-associated factor 8 [Cucumis melo]7.6e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

XP_022136068.1 DDB1- and CUL4-associated factor 8 [Momordica charantia]2.7e-60100Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESDIKIWTPKA
Subjt:  GIESDIKIWTPKA

TrEMBL top hitse value%identityAlignment
A0A0A0K4R4 Uncharacterized protein5.6e-5690.27Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNPV P+S+SSD+SEMGAENV++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGG+LIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

A0A1S3BIJ4 DDB1- and CUL4-associated factor 83.7e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

A0A5A7TB61 DDB1-and CUL4-associated factor 83.7e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

A0A5D3DIH7 DDB1-and CUL4-associated factor 83.7e-5589.38Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNP  P+S+SSD+SEMGAE V++G PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIW+KKGGELIRVMEADEDVVNCIEPHPH+TMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESD+KIWTPKA
Subjt:  GIESDIKIWTPKA

A0A6J1C6L2 DDB1- and CUL4-associated factor 81.3e-60100Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTPKA
        GIESDIKIWTPKA
Subjt:  GIESDIKIWTPKA

SwissProt top hitse value%identityAlignment
Q5R448 DDB1- and CUL4-associated factor 81.8e-2753.85Show/hide
Query:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW
        + + + S   GA+ V+      YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K   ++I+ ME D+  VVNC+EPHPH+ +LA+SG++ D+KIW
Subjt:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW

Query:  TPKA
         P A
Subjt:  TPKA

Q5TAQ9 DDB1- and CUL4-associated factor 81.8e-2753.85Show/hide
Query:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW
        + + + S   GA+ V+      YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K   ++I+ ME D+  VVNC+EPHPH+ +LA+SG++ D+KIW
Subjt:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW

Query:  TPKA
         P A
Subjt:  TPKA

Q5U2M6 DDB1- and CUL4-associated factor 81.1e-2763.41Show/hide
Query:  YKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIWTPKA
        YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K   ++I+ ME D+  VVNC+EPHPH+ +LA+SG++ D+KIW P A
Subjt:  YKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIWTPKA

Q6NRH1 DDB1- and CUL4-associated factor 81.2e-2650.96Show/hide
Query:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW
        + + + S   GAE ++      YKGHRN  TVKGVNF+GP+ E+VVSGSDCG IF+W+K   ++++ M+ D+  VVNC+EPHPH+ +LA+SG++ D+KIW
Subjt:  VSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIW

Query:  TPKA
         P A
Subjt:  TPKA

Q8N7N5 DDB1- and CUL4-associated factor 81.1e-2763.41Show/hide
Query:  YKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIWTPKA
        YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K   ++I+ ME D+  VVNC+EPHPH+ +LA+SG++ D+KIW P A
Subjt:  YKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADE-DVVNCIEPHPHVTMLASSGIESDIKIWTPKA

Arabidopsis top hitse value%identityAlignment
AT3G45620.1 Transducin/WD40 repeat-like superfamily protein3.3e-3261.17Show/hide
Query:  SPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKI
        SPVS+S +  +      E   PQVY GHRN +TVKGVNFFGP  EYV SGSDCG IFIWKKKGG+L+R M  D  VVN +E HPH+ +LAS GIE  +K+
Subjt:  SPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKI

Query:  WTP
        WTP
Subjt:  WTP

AT3G45620.2 Transducin/WD40 repeat-like superfamily protein3.3e-3261.17Show/hide
Query:  SPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKI
        SPVS+S +  +      E   PQVY GHRN +TVKGVNFFGP  EYV SGSDCG IFIWKKKGG+L+R M  D  VVN +E HPH+ +LAS GIE  +K+
Subjt:  SPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKI

Query:  WTP
        WTP
Subjt:  WTP

AT4G35140.1 Transducin/WD40 repeat-like superfamily protein5.8e-4572.65Show/hide
Query:  LGPNPNPVSPVSMS----SDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTM
        LG NP P SP+S S    S+SS    +  EH    VYKGH+NCETVKGVNFFGP+ EYVVSGSDCGRIFIW+KKGGELIRVMEAD  VVNCIEPHPH+ +
Subjt:  LGPNPNPVSPVSMS----SDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTM

Query:  LASSGIESDIKIWTPKA
        LASSGIESDIK+WT KA
Subjt:  LASSGIESDIKIWTPKA

AT4G38480.1 Transducin/WD40 repeat-like superfamily protein3.4e-3766.67Show/hide
Query:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS
        LGP P P      SS  +E      E  +PQVYK H N ETVKGVNFFGPKCEYVVSGSDCGRIFIW+KK GEL+R MEAD  VVNCIE HPH+ ++ SS
Subjt:  LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASS

Query:  GIESDIKIWTP
        GI++DIKIWTP
Subjt:  GIESDIKIWTP

AT5G10940.1 transducin family protein / WD-40 repeat family protein4.2e-1950Show/hide
Query:  YKGHRNCET-VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKIWTPKA
        Y GH N  T +K  +F G + EY+ SGSD GR FIW+K+ G L++V+  DE V+NCI+ HP  +++A+SGI++ IKIW+P A
Subjt:  YKGHRNCET-VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKIWTPKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGTCCAAACCCAAATCCAGTGTCTCCAGTATCTATGAGTAGTGATTCGAGTGAAATGGGAGCTGAAAATGTTGAACATGGTAGTCCACAAGTTTATAAAGGACATAG
AAACTGTGAGACGGTAAAAGGTGTCAACTTTTTTGGACCGAAATGTGAGTATGTCGTTAGCGGATCTGATTGTGGCAGAATATTTATATGGAAGAAAAAGGGTGGAGAGC
TAATCCGAGTCATGGAAGCAGATGAGGATGTCGTGAACTGCATTGAGCCGCATCCTCACGTGACCATGCTTGCTAGTAGTGGAATTGAAAGCGACATCAAGATATGGACT
CCAAAGGCC
mRNA sequenceShow/hide mRNA sequence
TTGGGTCCAAACCCAAATCCAGTGTCTCCAGTATCTATGAGTAGTGATTCGAGTGAAATGGGAGCTGAAAATGTTGAACATGGTAGTCCACAAGTTTATAAAGGACATAG
AAACTGTGAGACGGTAAAAGGTGTCAACTTTTTTGGACCGAAATGTGAGTATGTCGTTAGCGGATCTGATTGTGGCAGAATATTTATATGGAAGAAAAAGGGTGGAGAGC
TAATCCGAGTCATGGAAGCAGATGAGGATGTCGTGAACTGCATTGAGCCGCATCCTCACGTGACCATGCTTGCTAGTAGTGGAATTGAAAGCGACATCAAGATATGGACT
CCAAAGGCC
Protein sequenceShow/hide protein sequence
LGPNPNPVSPVSMSSDSSEMGAENVEHGSPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVMEADEDVVNCIEPHPHVTMLASSGIESDIKIWT
PKA