; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022204 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022204
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsignal recognition particle 43 kDa protein, chloroplastic
Genome locationscaffold47:1661044..1662120
RNA-Seq ExpressionMS022204
SyntenyMS022204
Gene Ontology termsGO:0009644 - response to high light intensity (biological process)
GO:0045038 - protein import into chloroplast thylakoid membrane (biological process)
GO:0070208 - protein heterotrimerization (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0080085 - signal recognition particle, chloroplast targeting (cellular component)
GO:0030674 - protein binding, bridging (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0097718 - disordered domain specific binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR002110 - Ankyrin repeat
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain
IPR030300 - Signal recognition particle 43kDa protein
IPR036770 - Ankyrin repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589032.1 Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-14774.47Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        MDA+F+NQS+SRLK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+    +  +  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE C+R+LAE GA++DHRD SGGFTALHMAAGYVKP
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV
        G VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV

Query:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG
        ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DL+ EFE            D +AQSSNG
Subjt:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG

XP_004153574.1 signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus]1.7e-15376.86Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        M+A+FLNQS+SRLK+ PK +PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+       K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LA+ G N++HRDNSGGFTALHMAAGYVKP
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV
          VE L++LGADPE++DEKGRTALELA+EILKATPR+QF RR+GLE+V+ A+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DLV
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV

Query:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSN
         D+EAGLEYAVAEAV GKR+GDDGKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQSSN
Subjt:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSN

XP_008447899.1 PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis melo]5.0e-15376.52Show/hide
Query:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG
        M+A+FLNQS+SRLK+ PK   PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+       K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDG
Subjt:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG

Query:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK
        H+PSWVPSDFIA+DVVAEYETPWWTAAKKAD+SAL+SLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LAE G N++HRDNSGGFTALHMAAGYVK
Subjt:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK

Query:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL
        P  VE L++LGADPE+EDEKGRTALELA+EILKATPR+QF RR+GLE+V+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Subjt:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL

Query:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQS
        VAD+EAGLEYAVAEAV GKR+GD+GKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQ+
Subjt:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQS

XP_022135674.1 signal recognition particle 43 kDa protein, chloroplastic [Momordica charantia]2.1e-19999.16Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV
        MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSN AISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV

Query:  PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ
        PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ
Subjt:  PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ

Query:  LLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
        LLDLGA PEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
Subjt:  LLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA

Query:  GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG
        GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEP+DNVDPDLIKEFEDAQAQSSNG
Subjt:  GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG

XP_038888741.1 signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida]1.4e-15578.67Show/hide
Query:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG
        MDA+F+NQS+SRLK+SPK   P PP   SR P+ NL+     F+  AVQ+DQ L QQ+       K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDG
Subjt:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG

Query:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK
        H+PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLIDA DGRD DAVDEDGRTALLFVAGLGS  CVRMLAE G N+DHRDNSGGFTALH+AAGYVK
Subjt:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK

Query:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL
        P  VE L++LGADPE+EDEKGRT L LA+EILKATPR+QF RR+GLERV+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Subjt:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL

Query:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQ
        VADFEAGLEYAVAEAV GKR GDDGKMEYLVKWTDI+DATWEP DNVDPDLI EFE AQAQ
Subjt:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQ

TrEMBL top hitse value%identityAlignment
A0A0A0K634 Uncharacterized protein8.4e-15476.86Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        M+A+FLNQS+SRLK+ PK +PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+       K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LA+ G N++HRDNSGGFTALHMAAGYVKP
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV
          VE L++LGADPE++DEKGRTALELA+EILKATPR+QF RR+GLE+V+ A+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DLV
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV

Query:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSN
         D+EAGLEYAVAEAV GKR+GDDGKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQSSN
Subjt:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSN

A0A1S3BHX6 signal recognition particle 43 kDa protein, chloroplastic2.4e-15376.52Show/hide
Query:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG
        M+A+FLNQS+SRLK+ PK   PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+       K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDG
Subjt:  MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDG

Query:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK
        H+PSWVPSDFIA+DVVAEYETPWWTAAKKAD+SAL+SLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LAE G N++HRDNSGGFTALHMAAGYVK
Subjt:  HAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVK

Query:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL
        P  VE L++LGADPE+EDEKGRTALELA+EILKATPR+QF RR+GLE+V+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Subjt:  PGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL

Query:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQS
        VAD+EAGLEYAVAEAV GKR+GD+GKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQ+
Subjt:  VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQS

A0A6J1C248 signal recognition particle 43 kDa protein, chloroplastic1.0e-19999.16Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV
        MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSN AISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWV

Query:  PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ
        PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ
Subjt:  PSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQ

Query:  LLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
        LLDLGA PEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
Subjt:  LLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA

Query:  GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG
        GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEP+DNVDPDLIKEFEDAQAQSSNG
Subjt:  GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG

A0A6J1EP65 signal recognition particle 43 kDa protein, chloroplastic-like6.9e-14874.47Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        MDA+F+NQS+SRLK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+    +  +  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE C+R+LAE GA++DHRD SGGFTALHMAAGYVKP
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV
        G VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV

Query:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG
        ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DL+ EFE            D +AQSSNG
Subjt:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG

A0A6J1JM92 signal recognition particle 43 kDa protein, chloroplastic3.4e-14774.47Show/hide
Query:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        MDA+F+NQS+S LK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+    +  +  +DE+YGEVDGIIGSR+L D +GMEYLI WKDGH
Subjt:  MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPSDFIA+DVVAEYETPWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE CVR+LAE GA++DHRD SGGFTALHMAAGYVKP
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV
        G VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV

Query:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG
        ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DLI EFE            D +AQSSNG
Subjt:  ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE------------DAQAQSSNG

SwissProt top hitse value%identityAlignment
O22265 Signal recognition particle 43 kDa protein, chloroplastic6.9e-11359.12Show/hide
Query:  ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAISAGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        AL ++QS+SR+K+SP    SS      P  +P R ++  F        QR  +++  ++   + +++   +YGEV+ IIGSR   +G+ MEYLI WKDGH
Subjt:  ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAISAGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPS +IA DVV+EYETPWWTAA+KADE AL  L+   + RD+DAVDE+GRTALLFVAGLGS+ CVR+LAE GA++DHRD  GG TALHMAAGYV+P
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA
          VE L++LGAD EVEDE+G TALELAREILK TP+   +QFGRR+GLE+V+  LE  VFEYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +A 
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA

Query:  DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQ
        D+  D+E GLEYAVAE+V GKR+GDDGK +EYLVKWTD+ DATWEP DNVD  L+  ++  Q
Subjt:  DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQ

Q06527 Ankyrin homolog3.8e-1043.52Show/hide
Query:  EYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVE
        E  T    AA K +   L  LI+   G DL+A D+ G TALL  A  G    V  LA  GA +D  D  G  TAL +A G+     VE+LL +GADP  +
Subjt:  EYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVE

Query:  DEKGRTAL
        D KG TAL
Subjt:  DEKGRTAL

Q69ZR2 E3 ubiquitin-protein ligase HECTD13.5e-0833.98Show/hide
Query:  KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALEL
        +  D  AL   ID     +++ +D+ G+T L + +  G++  V  L E GA+V+    S   ++LH AA + +P   + LL  GA+P++ DE G+T L+ 
Subjt:  KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALEL

Query:  ARE
        ARE
Subjt:  ARE

Q8LSQ2 Probable signal recognition particle 43 kDa protein, chloroplastic1.2e-9351.44Show/hide
Query:  MDALFLNQSISRLK-ISPKSSPLPPL-----YPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRAL------QDGS-----
        M+A+  + S+SRLK  +P +   P L     +  R+PNR L  +A AV  DQ      NPA   G  ++DE YGEVD I+ SR +      +DGS     
Subjt:  MDALFLNQSISRLK-ISPKSSPLPPL-----YPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRAL------QDGS-----

Query:  GMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLI-DAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS-G
          EYL+ WKDGH PSW+P++ IA DVVAEYETPWWTAAKKAD + + +L+ D    RD DA D  GRTA+ F AGLGSE CVR LAE GA+V   + + G
Subjt:  GMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLI-DAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS-G

Query:  GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKD
        G T LH+A GY +P AV  LL+LGA+PE  D +GRT LEL +++L  TP+     F RR+ LE     LEKAV+E+ EVE +++ RG+G+  EYLV+W+D
Subjt:  GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKD

Query:  GEDNEWVKAGLIAADLVADFEAGLEYAVAEAVAGKRMG--DDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG
        G D EWV+A  +A DLV DF+AGLEYAVAEAV  KR     +GK EYLVKW DIE+ATWEP +NVD +L++EFE  Q+  + G
Subjt:  GEDNEWVKAGLIAADLVADFEAGLEYAVAEAVAGKRMG--DDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG

Q9VL06 E3 ubiquitin-protein ligase Ufd44.6e-0835.24Show/hide
Query:  KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALEL
        +  D  AL+  I++  G D++ +D+ G+T L + +  G+   V  L E GA+V+    S   ++LH AA + +P   + LL  GA P++ DE G+T L+ 
Subjt:  KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALEL

Query:  AREIL
        ARE L
Subjt:  AREIL

Arabidopsis top hitse value%identityAlignment
AT2G17390.1 ankyrin repeat-containing 2B4.7e-0834.95Show/hide
Query:  AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALE
        A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L + GAN +  D +   T LH AAGY +   V  LL+ GA    ++   +  ++
Subjt:  AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALE

Query:  LAR
        +AR
Subjt:  LAR

AT2G47450.1 chloroplast signal recognition particle component (CAO)4.9e-11459.12Show/hide
Query:  ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAISAGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGH
        AL ++QS+SR+K+SP    SS      P  +P R ++  F        QR  +++  ++   + +++   +YGEV+ IIGSR   +G+ MEYLI WKDGH
Subjt:  ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAISAGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGH

Query:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP
        +PSWVPS +IA DVV+EYETPWWTAA+KADE AL  L+   + RD+DAVDE+GRTALLFVAGLGS+ CVR+LAE GA++DHRD  GG TALHMAAGYV+P
Subjt:  APSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKP

Query:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA
          VE L++LGAD EVEDE+G TALELAREILK TP+   +QFGRR+GLE+V+  LE  VFEYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +A 
Subjt:  GAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA

Query:  DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQ
        D+  D+E GLEYAVAE+V GKR+GDDGK +EYLVKWTD+ DATWEP DNVD  L+  ++  Q
Subjt:  DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQ

AT4G35450.3 ankyrin repeat-containing protein 24.7e-0834.95Show/hide
Query:  AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALE
        A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L + GA+V+  D +   T LH AAGY +   V  LL+ GA   +++   +T ++
Subjt:  AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALE

Query:  LAR
        +A+
Subjt:  LAR

AT5G13530.1 protein kinases;ubiquitin-protein ligases1.2e-0831.73Show/hide
Query:  AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTA
        A ++     ++++++  +  ++D VD+DG   L+F    GS  CV +L + GANV  R   G G +  H+ + + +P  + +LL  GADP   D++G T 
Subjt:  AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTA

Query:  LELA
        L  A
Subjt:  LELA

AT5G13530.2 protein kinases;ubiquitin-protein ligases1.2e-0831.73Show/hide
Query:  AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTA
        A ++     ++++++  +  ++D VD+DG   L+F    GS  CV +L + GANV  R   G G +  H+ + + +P  + +LL  GADP   D++G T 
Subjt:  AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTA

Query:  LELA
        L  A
Subjt:  LELA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCCCTTTTCCTCAACCAGTCCATTTCCCGCCTCAAAATCTCCCCCAAATCCAGCCCTCTTCCTCCCCTCTACCCCTCTCGAATTCCCAATCGCAATCTCAAATT
CAGCGCCTGCGCAGTCCAAAACGACCAACGATTAGCACAGCAATCCAACCCGGCGATTTCCGCCGGGAAGTTCAACGAGGATGAAACTTACGGCGAAGTCGACGGAATCA
TCGGTAGCCGAGCGCTACAGGACGGCTCCGGAATGGAGTATTTAATCGCATGGAAAGACGGTCACGCCCCGTCCTGGGTGCCGTCCGATTTCATCGCCAGAGACGTGGTG
GCGGAGTACGAGACGCCGTGGTGGACCGCCGCGAAGAAGGCCGACGAATCCGCGCTCAAGTCGCTGATAGACGCGGCGGACGGGCGCGATTTGGACGCAGTCGACGAGGA
CGGGAGGACGGCGCTGCTGTTCGTGGCGGGGCTGGGATCGGAGGCGTGCGTGAGGATGTTAGCGGAGGGCGGGGCGAACGTGGACCACCGCGACAACAGCGGCGGGTTCA
CGGCGCTGCACATGGCGGCCGGGTACGTGAAGCCGGGGGCGGTGGAGCAATTACTGGATCTGGGAGCAGATCCGGAAGTAGAGGACGAGAAGGGGCGGACGGCGCTGGAA
CTGGCGAGGGAGATTCTGAAGGCGACGCCGAGGATTCAGTTCGGGCGGCGGATGGGGCTGGAGAGGGTGGTCGGAGCGCTGGAGAAGGCGGTGTTTGAGTACGCGGAGGT
GGAGGCGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGATGGGGAAGACAACGAGTGGGTGAAGGCGGGGCTGATTGCGGCGGATT
TGGTGGCGGATTTCGAGGCCGGACTGGAGTACGCGGTGGCGGAGGCGGTGGCCGGAAAGAGGATGGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATT
GAGGACGCCACGTGGGAGCCGGTGGATAATGTGGATCCTGATCTGATTAAGGAGTTTGAAGACGCCCAAGCCCAATCCAGTAATGGT
mRNA sequenceShow/hide mRNA sequence
ATGGATGCCCTTTTCCTCAACCAGTCCATTTCCCGCCTCAAAATCTCCCCCAAATCCAGCCCTCTTCCTCCCCTCTACCCCTCTCGAATTCCCAATCGCAATCTCAAATT
CAGCGCCTGCGCAGTCCAAAACGACCAACGATTAGCACAGCAATCCAACCCGGCGATTTCCGCCGGGAAGTTCAACGAGGATGAAACTTACGGCGAAGTCGACGGAATCA
TCGGTAGCCGAGCGCTACAGGACGGCTCCGGAATGGAGTATTTAATCGCATGGAAAGACGGTCACGCCCCGTCCTGGGTGCCGTCCGATTTCATCGCCAGAGACGTGGTG
GCGGAGTACGAGACGCCGTGGTGGACCGCCGCGAAGAAGGCCGACGAATCCGCGCTCAAGTCGCTGATAGACGCGGCGGACGGGCGCGATTTGGACGCAGTCGACGAGGA
CGGGAGGACGGCGCTGCTGTTCGTGGCGGGGCTGGGATCGGAGGCGTGCGTGAGGATGTTAGCGGAGGGCGGGGCGAACGTGGACCACCGCGACAACAGCGGCGGGTTCA
CGGCGCTGCACATGGCGGCCGGGTACGTGAAGCCGGGGGCGGTGGAGCAATTACTGGATCTGGGAGCAGATCCGGAAGTAGAGGACGAGAAGGGGCGGACGGCGCTGGAA
CTGGCGAGGGAGATTCTGAAGGCGACGCCGAGGATTCAGTTCGGGCGGCGGATGGGGCTGGAGAGGGTGGTCGGAGCGCTGGAGAAGGCGGTGTTTGAGTACGCGGAGGT
GGAGGCGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGATGGGGAAGACAACGAGTGGGTGAAGGCGGGGCTGATTGCGGCGGATT
TGGTGGCGGATTTCGAGGCCGGACTGGAGTACGCGGTGGCGGAGGCGGTGGCCGGAAAGAGGATGGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATT
GAGGACGCCACGTGGGAGCCGGTGGATAATGTGGATCCTGATCTGATTAAGGAGTTTGAAGACGCCCAAGCCCAATCCAGTAATGGT
Protein sequenceShow/hide protein sequence
MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVV
AEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALE
LAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDI
EDATWEPVDNVDPDLIKEFEDAQAQSSNG