; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022231 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022231
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold47:1875169..1875642
RNA-Seq ExpressionMS022231
SyntenyMS022231
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8008804.1 hypothetical protein FH972_005279 [Carpinus fangiana]7.4e-1635.93Show/hide
Query:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM
        Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    +++ F+++ E   H+I LPK   G   F  G SKGW+   
Subjt:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM

Query:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF
           +   ++ L NPI+ V+  LPS                 + I S ++++ELSS++IS+C VAA F
Subjt:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF

KAE8008846.1 hypothetical protein FH972_005319 [Carpinus fangiana]4.8e-1534.73Show/hide
Query:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM
        Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    +++ F+++ E   HTI LP+   G   F  G SKGW+   
Subjt:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM

Query:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF
           +   ++ L +PI+ V+  LPS                 + I S ++++ELSS+++S+C VAA F
Subjt:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF

VVA31268.1 PREDICTED: F-box/kelch-repeat [Prunus dulcis]4.3e-1641.32Show/hide
Query:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-
        W +VP DIME I  H +  + I   ++CKSW +L ++ D    P++ WLLLP  S +  + F +V + KFHT++LPK + G RV   GCSKGW++ + + 
Subjt:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-

Query:  -VTFEISLFNPITRVEYFLPS
         +  ++ L NPI+R +Y LPS
Subjt:  -VTFEISLFNPITRVEYFLPS

XP_021818908.1 uncharacterized protein LOC110760869 [Prunus avium]3.7e-1539.67Show/hide
Query:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-
        W ++P DIME I  H +  + I  +++CKSW +L ++ D    P++ WLLLP  S +  + F +V + KFHT+ LPK + G RV   GCSKGW++ + + 
Subjt:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-

Query:  -VTFEISLFNPITRVEYFLPS
         +  ++ L NPI+R ++ LPS
Subjt:  -VTFEISLFNPITRVEYFLPS

XP_022155350.1 uncharacterized protein LOC111022492 [Momordica charantia]1.1e-3559.31Show/hide
Query:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMD
        Y PW ++P D+ME IAL  +STDYI +SMVCKSWQ+LLLQSDI+RP+  WLLLPH S++ T++ Y+V E KFHT      +DG    V GCSKGWVIF  
Subjt:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMD

Query:  KVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAA
         V  +ISLFNPI+  +  L S P    LQRVELSSS ISECTV A
Subjt:  KVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAA

TrEMBL top hitse value%identityAlignment
A0A5E4FUV8 PREDICTED: F-box/kelch-repeat2.1e-1641.32Show/hide
Query:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-
        W +VP DIME I  H +  + I   ++CKSW +L ++ D    P++ WLLLP  S +  + F +V + KFHT++LPK + G RV   GCSKGW++ + + 
Subjt:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-

Query:  -VTFEISLFNPITRVEYFLPS
         +  ++ L NPI+R +Y LPS
Subjt:  -VTFEISLFNPITRVEYFLPS

A0A5N6QP56 F-box domain-containing protein3.6e-1635.93Show/hide
Query:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM
        Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    +++ F+++ E   H+I LPK   G   F  G SKGW+   
Subjt:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM

Query:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF
           +   ++ L NPI+ V+  LPS                 + I S ++++ELSS++IS+C VAA F
Subjt:  --DKVTFEISLFNPITRVEYFLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF

A0A5N6R432 F-box domain-containing protein2.3e-1535.07Show/hide
Query:  FQKNEDENIPYDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVG
        F    ++   +  W+ +P  IME I    +  D +HSS VCKSW++L++Q  +   P++ WL+LPHR + +++ FY++ E   + I LPK   G   F  
Subjt:  FQKNEDENIPYDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVG

Query:  GCSKGWVIFMDKVTF--EISLFNPITRVEYFLPS
        GCSK W++      +  E+ LFNP +  +  LPS
Subjt:  GCSKGWVIFMDKVTF--EISLFNPITRVEYFLPS

A0A6J1DM79 uncharacterized protein LOC1110224925.3e-3659.31Show/hide
Query:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMD
        Y PW ++P D+ME IAL  +STDYI +SMVCKSWQ+LLLQSDI+RP+  WLLLPH S++ T++ Y+V E KFHT      +DG    V GCSKGWVIF  
Subjt:  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMD

Query:  KVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAA
         V  +ISLFNPI+  +  L S P    LQRVELSSS ISECTV A
Subjt:  KVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAA

A0A6P5SZ44 uncharacterized protein LOC1107608691.8e-1539.67Show/hide
Query:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-
        W ++P DIME I  H +  + I  +++CKSW +L ++ D    P++ WLLLP  S +  + F +V + KFHT+ LPK + G RV   GCSKGW++ + + 
Subjt:  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK-

Query:  -VTFEISLFNPITRVEYFLPS
         +  ++ L NPI+R ++ LPS
Subjt:  -VTFEISLFNPITRVEYFLPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCAAAAAAATGAGGATGAAAATATACCATATGATCCATGGAATAGTGTGCCAAAAGATATCATGGAGGGAATTGCTTTGCATTTTAGTTCAACTGATTATATTCATAG
CTCTATGGTTTGCAAATCATGGCAAGCACTTCTTCTGCAATCTGATATTGTTAGGCCAAAAGTGCTTTGGCTTTTGCTTCCACATCGCTCAACTAGAGACACCATGCAAT
TCTACAATGTTTTGGAGGAAAAATTTCACACCATTGTGTTGCCAAAGGTCATTGATGGGAGTAGGGTTTTTGTTGGGGGGTGTTCCAAAGGTTGGGTTATTTTCATGGAT
AAAGTTACGTTCGAGATCTCTCTTTTTAATCCCATCACTCGGGTCGAGTACTTCCTTCCATCGTCACCAATCATGTCGCCTTTACAGCGCGTTGAATTATCTTCATCGAA
TATTTCAGAGTGTACTGTGGCTGCATTCTTTGAC
mRNA sequenceShow/hide mRNA sequence
TTTCAAAAAAATGAGGATGAAAATATACCATATGATCCATGGAATAGTGTGCCAAAAGATATCATGGAGGGAATTGCTTTGCATTTTAGTTCAACTGATTATATTCATAG
CTCTATGGTTTGCAAATCATGGCAAGCACTTCTTCTGCAATCTGATATTGTTAGGCCAAAAGTGCTTTGGCTTTTGCTTCCACATCGCTCAACTAGAGACACCATGCAAT
TCTACAATGTTTTGGAGGAAAAATTTCACACCATTGTGTTGCCAAAGGTCATTGATGGGAGTAGGGTTTTTGTTGGGGGGTGTTCCAAAGGTTGGGTTATTTTCATGGAT
AAAGTTACGTTCGAGATCTCTCTTTTTAATCCCATCACTCGGGTCGAGTACTTCCTTCCATCGTCACCAATCATGTCGCCTTTACAGCGCGTTGAATTATCTTCATCGAA
TATTTCAGAGTGTACTGTGGCTGCATTCTTTGAC
Protein sequenceShow/hide protein sequence
FQKNEDENIPYDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMD
KVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAAFFD