CuGenDBv2

Gene ID	MS022232
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box domain-containing protein
Genome location	scaffold47:1884798..1885187
RNA-Seq Expression	MS022232
Synteny	MS022232
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8008804.1 hypothetical protein FH972_005279 [Carpinus fangiana]

1.8e-20

46.34

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLP   + +SL FF+  E   H ++LPK  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LLNPISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

KAE8008846.1 hypothetical protein FH972_005319 [Carpinus fangiana]

1.2e-19

44.72

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLP   + +SL FF+  E   H ++LP+  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LL+PISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

KAE8055702.1 hypothetical protein FH972_012527 [Carpinus fangiana]

1.4e-20

43.55

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W++LP  +ME I   LN  D +H+S VCKSW SL+     R  PQ+PW++LP +   +SL F++  EA  + ++LPK  +GG+ FG SK WL++     R
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWY-HVYLLNPISGVKCRLPPL
         + W   VYL NP SG K  LP L
Subjt:  RSGWY-HVYLLNPISGVKCRLPPL

XP_004297987.1 PREDICTED: uncharacterized protein LOC101310695 [Fragaria vesca subsp. vesca]

2.0e-19

43.09

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDI--SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        WE LP D+M  I  +L+  D I  S+VCK W S+       S PQ+PW+LLP+ S +H L +F   E K   L LP+ ++GG+  GSSKGW++++  +  
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDI--SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
         S    ++L+NPISGV+ +LPPL
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

XP_022155350.1 uncharacterized protein LOC111022492 [Momordica charantia]

4.2e-25

48.84

Show/hide

Query:  PWEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLS-LLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        PW++LP D+MEKI L LNSTDYI  S+VCKSW S LLQSDI RPQ PW+LLP  S  H++K ++  E K+H   +     G  + G SKGW++       
Subjt:  PWEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLS-LLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYISL
        ++    + L NPISG KC L  LP  +SL
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYISL

TrEMBL top hits

e value

%identity

Alignment

A0A5N6QP56 F-box domain-containing protein

8.9e-21

46.34

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLP   + +SL FF+  E   H ++LPK  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LLNPISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

A0A5N6QPU6 F-box domain-containing protein

5.7e-20

44.72

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLP   + +SL FF+  E   H ++LP+  +GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LL+PISGV+  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

A0A5N6QRN4 F-box domain-containing protein

2.8e-19

45.53

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W+++P D+M +I   LN  D I    VCKSW S++ Q DI S P +PW+LLP     +SL FF+  E   H ++LPK   GG+ FGSSKGWL +    R 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLL-QSDI-SRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPL
              V+LLNPISG +  LP L
Subjt:  RSGWYHVYLLNPISGVKCRLPPL

A0A5N6R432 F-box domain-containing protein

6.8e-21

43.55

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        W++LP  +ME I   LN  D +H+S VCKSW SL+     R  PQ+PW++LP +   +SL F++  EA  + ++LPK  +GG+ FG SK WL++     R
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISR--PQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWY-HVYLLNPISGVKCRLPPL
         + W   VYL NP SG K  LP L
Subjt:  RSGWY-HVYLLNPISGVKCRLPPL

A0A6J1DM79 uncharacterized protein LOC111022492

2.0e-25

48.84

Show/hide

Query:  PWEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLS-LLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR
        PW++LP D+MEKI L LNSTDYI  S+VCKSW S LLQSDI RPQ PW+LLP  S  H++K ++  E K+H   +     G  + G SKGW++       
Subjt:  PWEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLS-LLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRR

Query:  RSGWYHVYLLNPISGVKCRLPPLPNYISL
        ++    + L NPISG KC L  LP  +SL
Subjt:  RSGWYHVYLLNPISGVKCRLPPLPNYISL

SwissProt top hits

e value

%identity

Alignment

Q9FVS1 F-box/kelch-repeat protein At1g57790

6.3e-08

28.57

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS
        W+DLP +++  +   L   D + ASVVCKSW     S     + PW++   ++  ++  F++    K + + LPK L G  +  S  GWL++      + 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS

Query:  GWYHVYLLNPISGVKCRLP
           H  L NP +     LP
Subjt:  GWYHVYLLNPISGVKCRLP

Q9LSA5 F-box/kelch-repeat protein At3g18720

5.4e-07

30.16

Show/hide

Query:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQS----DDHSLKFFNFLEAKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR
        DL ++++ ++GL  N    IHAS+VCK+WL    S       PW+  P+       +     FN   ++ H L+ P+ L G    +  +  GWL+VV   
Subjt:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQS----DDHSLKFFNFLEAKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR

Query:  RRRSGWYHVYLLNPISGVKCRLPPLP
          +     V+ LNP +G +  LP +P
Subjt:  RRRSGWYHVYLLNPISGVKCRLPPLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G57790.1 F-box family protein

4.5e-09

28.57

Show/hide

Query:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS
        W+DLP +++  +   L   D + ASVVCKSW     S     + PW++   ++  ++  F++    K + + LPK L G  +  S  GWL++      + 
Subjt:  WEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRS

Query:  GWYHVYLLNPISGVKCRLP
           H  L NP +     LP
Subjt:  GWYHVYLLNPISGVKCRLP

AT3G18720.1 F-box family protein

3.8e-08

30.16

Show/hide

Query:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQS----DDHSLKFFNFLEAKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR
        DL ++++ ++GL  N    IHAS+VCK+WL    S       PW+  P+       +     FN   ++ H L+ P+ L G    +  +  GWL+VV   
Subjt:  DLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQS----DDHSLKFFNFLEAKYHILRLPKGLEG--GYIFGSSKGWLVVVFRR

Query:  RRRSGWYHVYLLNPISGVKCRLPPLP
          +     V+ LNP +G +  LP +P
Subjt:  RRRSGWYHVYLLNPISGVKCRLPPLP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCTCGTCCATGGGAAGATCTGCCAAAGGATGTTATGGAGAAAATTGGTTTGAATCTTAATTCAACTGATTACATTCATGCCTCTGTTGTTTGCAAATCATGGCTATCACT
TTTACAATCTGATATTTCAAGACCTCAAATTCCTTGGATTTTGCTTCCTCGTCAATCAGATGACCATAGCCTAAAATTCTTCAACTTTTTGGAAGCCAAATATCACATCT
TAAGGTTGCCTAAGGGTCTTGAAGGGGGATATATTTTTGGGAGTTCCAAAGGATGGCTTGTTGTTGTGTTTAGGAGAAGAAGAAGATCAGGATGGTACCATGTCTATCTT
TTGAATCCAATCTCAGGTGTCAAGTGTAGGCTTCCGCCGCTTCCAAATTATATATCTCTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

SRPWEDLPKDVMEKIGLNLNSTDYIHASVVCKSWLSLLQSDISRPQIPWILLPRQSDDHSLKFFNFLEAKYHILRLPKGLEGGYIFGSSKGWLVVVFRRRRRSGWYHVYL
LNPISGVKCRLPPLPNYISL

MS022232 (gene) of Bitter gourd (TR) v1 genome