CuGenDBv2

Gene ID	MS022244
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	scaffold47:1984346..1985376
RNA-Seq Expression	MS022244
Synteny	MS022244
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022136277.1 uncharacterized protein At5g43822 isoform X1 [Momordica charantia]

1.9e-71

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

XP_022136278.1 uncharacterized protein At5g43822 isoform X2 [Momordica charantia]

1.9e-71

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

XP_022136279.1 uncharacterized protein At5g43822 isoform X3 [Momordica charantia]

1.9e-71

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

XP_031744200.1 uncharacterized protein At5g43822 isoform X1 [Cucumis sativus]

2.7e-65

89.58

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Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQV LIS F+NAS IIGRLQ+LQDPKN+GSLSGMDGIV+ALLAKQMESLQL+FSSI+KTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQ+VGLKPS+EDCLNGLMLLC MHRSE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

XP_031744201.1 uncharacterized protein At5g43822 isoform X3 [Cucumis sativus]

2.7e-65

89.58

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQV LIS F+NAS IIGRLQ+LQDPKN+GSLSGMDGIV+ALLAKQMESLQL+FSSI+KTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQ+VGLKPS+EDCLNGLMLLC MHRSE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4X9 Uncharacterized protein

1.3e-65

89.58

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQV LIS F+NAS IIGRLQ+LQDPKN+GSLSGMDGIV+ALLAKQMESLQL+FSSI+KTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQ+VGLKPS+EDCLNGLMLLC MHRSE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

A0A1S3BHR8 uncharacterized protein At5g43822 isoform X4

1.7e-65

89.58

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQV LIS F+NAS IIGRLQ+LQDPKN+GSLSGMDGIV+ALL KQMESLQL+FSSI+KTMEELGNVV SMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPS+EDCLNGLM+LC+MHRSE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

A0A6J1C3W3 uncharacterized protein At5g43822 isoform X3

9.3e-72

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

A0A6J1C552 uncharacterized protein At5g43822 isoform X1

9.3e-72

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

A0A6J1C781 uncharacterized protein At5g43822 isoform X2

9.3e-72

97.22

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQD KNYGSLSG+DGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHR+E
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

2.9e-30

47.92

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEA+++K+QQKFRK K+EM++W+ LQV  +SLFRNAS II RLQ +Q+  +YG+L  + GI DA++ +QM  L+    S++  MEE    V + EK++RD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        G QL +  S++   +++++R+G+KP I DCL GL +L DMH+SE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

2.1e-31

47.92

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD
        MEA+++K+QQKFRK K+EM++W+ LQV  +SLFRNAS II RLQ +Q+  +YG+L  + GI DA++ +QM  L+    S++  MEE    V + EK++RD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE
        G QL +  S++   +++++R+G+KP I DCL GL +L DMH+SE
Subjt:  GKQLVKGGSNQPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

Sequences

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CDS sequence

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ATGGAGGCCATGGTGAAAAAGTATCAGCAGAAATTCAGAAAGTTTAAGGACGAAATGGATCGCTGGGACGAGCTCCAAGTTTGCTTAATTTCGCTGTTCAGAAACGCTTC
CTTCATCATCGGGAGGTTGCAGATGCTTCAAGACCCTAAGAATTATGGCAGTCTGTCCGGCATGGATGGCATTGTAGACGCGCTATTGGCGAAGCAGATGGAATCCTTGC
AACTTAATTTCTCGTCTATTGAAAAAACAATGGAAGAACTTGGGAATGTTGTCCGATCGATGGAGAAGATTTATCGTGATGGGAAGCAATTAGTCAAAGGTGGTTCCAAT
CAGCCATCAATAAAACAACTACAGCAAAGAGTTGGTTTAAAACCCAGTATTGAAGATTGCTTGAATGGGTTAATGCTTCTATGCGACATGCACCGCTCTGAG

mRNA sequence

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Protein sequence

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MEAMVKKYQQKFRKFKDEMDRWDELQVCLISLFRNASFIIGRLQMLQDPKNYGSLSGMDGIVDALLAKQMESLQLNFSSIEKTMEELGNVVRSMEKIYRDGKQLVKGGSN
QPSIKQLQQRVGLKPSIEDCLNGLMLLCDMHRSE

MS022244 (gene) of Bitter gourd (TR) v1 genome