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MS022269 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022269
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL18-like
Genome locationscaffold47:2142202..2142351
RNA-Seq ExpressionMS022269
SyntenyMS022269
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030121 - AP-1 adaptor complex (cellular component)
GO:0035615 - clathrin adaptor activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ25264.1 putative chromatin regulator PHD family [Rosa chinensis]1.1e-1372.92Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CSVCLVEF  ED VSQL KCGH FH++CIE W+ R+HFTCPLCRS  F
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
TKY50666.1 RING-H2 finger protein ATL18 [Spatholobus suberectus]2.2e-1469.39Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
        CS+CLVE+ GED+VS+L +CGH FHL CIE W+HR+ F+CPLCRSFLF+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
XP_021297590.1 RING-H2 finger protein ATL18 [Herrania umbratica]1.1e-1375Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CS+CLVEF  ED VSQLHKC H FH+ CIE WL  D FTCPLCRSFLF
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
XP_022762435.1 RING-H2 finger protein ATL18-like [Durio zibethinus]1.5e-1576Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
        CS+CLVEF  ED VSQLHKCGH FH+ CIE WL RD FTCPLCRSFLF +
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
XP_039035324.1 RING-H2 finger protein ATL18-like [Hibiscus syriacus]1.4e-1370.83Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CS+CL E   ED VSQ+ KCGH FH+ CIE W+ RDHFTCPLCRSFLF
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
TrEMBL top hitse value%identityAlignment
A0A0A0K513 RING-type domain-containing protein9.0e-1472.92Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CSVCL EF  E  VSQLH+C H FHLECIE+WL R+ FTCPLCRSF+F
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
A0A2P6PTM5 Putative chromatin regulator PHD family5.3e-1472.92Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CSVCLVEF  ED VSQL KCGH FH++CIE W+ R+HFTCPLCRS  F
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
A0A6J1BE52 RING-H2 finger protein ATL185.3e-1475Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
        CS+CLVEF  ED VSQLHKC H FH+ CIE WL  D FTCPLCRSFLF
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF
A0A6J5VPD4 RING-type domain-containing protein1.5e-1367.35Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
        CS+CLVEF  ED VSQL KCGH FH++CIE W+ R HFTCP+CRS  F+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
A0A6P6AC29 RING-H2 finger protein ATL18-like7.3e-1676Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
        CS+CLVEF  ED VSQLHKCGH FH+ CIE WL RD FTCPLCRSFLF +
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
SwissProt top hitse value%identityAlignment
Q940Q4 RING-H2 finger protein ATL137.6e-1055.1Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
        C+VCL EF  ED +  L KC H FH++CI+ WL   H TCPLCRS L +
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
Q9LF64 RING-H2 finger protein ATL522.2e-0955.32Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
        CSVCL EF   +S+  L KC H FHL CI+ WL + H  CPLCR+F+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
Q9SRQ8 RING-H2 finger protein ATL513.4e-1054Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
        CSVCL EF   +S+  L KC H FH+ CI+ WL + H  CPLCR+F+ TS
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
Q9SZL4 RING-H2 finger protein ATL184.3e-1361.7Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
        C +CLVEF  ED+V+ L +C H FH+ CIE WL R H TCPLCRSF+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
Q9ZV53 Putative RING-H2 finger protein ATL499.9e-1057.14Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
        C VCL EF  ED +  L KC H FH+ECI+ WL   H TCPLCRS L +
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT
Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein1.6e-1053.19Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
        C VCL  F  E+ VS+L  C H FH  C++NW   +H TCPLCRS L
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
AT1G67856.1 RING/U-box superfamily protein6.0e-1051.06Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
        C VCL  F  E+ VS+L  C H FH  C++ W   +H TCPLCRS L
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
AT3G61460.1 brassinosteroid-responsive RING-H26.0e-1048.89Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRS
        C+VCL EF GE  +  L  C H FH  C++ W+  D  TCPLCR+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRS
AT4G17245.1 RING/U-box superfamily protein1.3e-0944Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
        C +CL EF   D++  L +C H FH+ CI+ WL   H +CP CR+ +F+S
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS
AT4G38140.1 RING/U-box superfamily protein3.1e-1461.7Show/hide
Query:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL
        C +CLVEF  ED+V+ L +C H FH+ CIE WL R H TCPLCRSF+
Subjt:  CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTCGGTTTGCCTGGTCGAGTTCGTCGGAGAAGATTCTGTGAGCCAGTTGCATAAATGTGGCCATCGTTTCCATCTTGAATGTATTGAAAATTGGCTCCATAGAGATCA
CTTCACCTGCCCTCTCTGCAGATCCTTCCTCTTCACTTCA
mRNA sequenceShow/hide mRNA sequence
TGCTCGGTTTGCCTGGTCGAGTTCGTCGGAGAAGATTCTGTGAGCCAGTTGCATAAATGTGGCCATCGTTTCCATCTTGAATGTATTGAAAATTGGCTCCATAGAGATCA
CTTCACCTGCCCTCTCTGCAGATCCTTCCTCTTCACTTCA
Protein sequenceShow/hide protein sequence
CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS