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MS022306 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022306
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a/b-binding family protein
Genome locationscaffold47:2441311..2441688
RNA-Seq ExpressionMS022306
SyntenyMS022306
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048752.1 hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa]2.5e-3067.69Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSS-TLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMP
        MGR  SEPTMVGTSIALLQ RFRQLQK+KQ+RE+KEL+NLL +SNRVDASIMHLEP  + S TLR    +DS+SLSLGL L+ N GKQ    I EARS+P
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSS-TLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMP

Query:  AVTKFWPDNSVTASMSRSFDSPDVDTTLHL
        + TKF P+NS   S  RSFD+ +VDTTLHL
Subjt:  AVTKFWPDNSVTASMSRSFDSPDVDTTLHL

KAE8646145.1 hypothetical protein Csa_016195, partial [Cucumis sativus]6.3e-2672.48Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMPA
        MGR +SEPTMVGTSIALLQ RFRQLQK+KQRRE+KEL+NLL +SNRVDASIMHLEP + SST RD+   DS+SLSLGL L+ NAGKQ    I EARSMP 
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMPA

Query:  VTKFWPDNS
         TKF   NS
Subjt:  VTKFWPDNS

KAG6589104.1 hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2058.06Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVD-ASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPAV-
        MGR SSE TM+GTSIALLQ RFRQLQKDKQRREKKEL++LLSDSNRV+ +SIMHLE   SS++ RD+   + DSLSLGL   +AGKQ  I EAR++ +  
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVD-ASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPAV-

Query:  ------TKFWPDNSVTASMSRSFD
              T+F  D  + + +S  FD
Subjt:  ------TKFWPDNSVTASMSRSFD

PON88475.1 hypothetical protein TorRG33x02_156890 [Trema orientale]2.2e-1850Show/hide
Query:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS
        MGRQS +  T V +SIALLQ RFRQLQK K+RRE+KEL+ +LS+S R+     H +P     +S+ +  +   S D  SLSLGL LQ+  KQ+ ++  RS
Subjt:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS

Query:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL
         P +T  WP+ S  AS S+SFDS D+DT+LHL
Subjt:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL

XP_023916992.1 uncharacterized protein LOC112028527 [Quercus suber]1.7e-1849.61Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSS---STLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPA
        MGRQS++PTMV +SIALLQ RFRQL+K K+RRE+KEL+NL +++ R+     H EP   S          S   DS SL L LQ   KQA + +A   P 
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSS---STLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPA

Query:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL
        +T  WP+++  AS SRSF++ DVDT+LHL
Subjt:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL

TrEMBL top hitse value%identityAlignment
A0A0A0K617 Uncharacterized protein6.8e-3472.09Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMPA
        MGR +SEPTMVGTSIALLQ RFRQLQK+KQRRE+KEL+NLL +SNRVDASIMHLEP + SST RD+   DS+SLSLGL L+ NAGKQ    I EARSMP 
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMPA

Query:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL
         TKF   NS   S  RSFDSP+VDTTLHL
Subjt:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL

A0A2N9FNY6 Uncharacterized protein1.6e-1950.39Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSS---STLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPA
        MGRQS++PTMV +SIALLQ RFRQL+K K+RRE+KEL+ L +++ R+     H EP   S     +    S   DS SLGL LQ   KQA  F+A  MP 
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSS---STLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPA

Query:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL
        +   WP+ +  AS SRSF++ DVDT+LHL
Subjt:  VTKFWPDNSVTASMSRSFDSPDVDTTLHL

A0A2P5E581 Uncharacterized protein4.0e-1849.24Show/hide
Query:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS
        MGRQS +  T V +SIALLQ RFRQLQK K+RRE+KEL+ +LS+S +V     H +P     +S+ +  +   S D  SLSLGL LQ+  KQ+ ++  RS
Subjt:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS

Query:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL
         P +T  WP+ S  AS S+SFD+ D+DT+LHL
Subjt:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL

A0A2P5ESL9 Uncharacterized protein1.0e-1850Show/hide
Query:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS
        MGRQS +  T V +SIALLQ RFRQLQK K+RRE+KEL+ +LS+S R+     H +P     +S+ +  +   S D  SLSLGL LQ+  KQ+ ++  RS
Subjt:  MGRQSSE-PTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEP-----RSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARS

Query:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL
         P +T  WP+ S  AS S+SFDS D+DT+LHL
Subjt:  MPAVTKFWPDNSVTASMSRSFDSPDVDTTLHL

A0A5D3E685 Uncharacterized protein1.2e-3067.69Show/hide
Query:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSS-TLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMP
        MGR  SEPTMVGTSIALLQ RFRQLQK+KQ+RE+KEL+NLL +SNRVDASIMHLEP  + S TLR    +DS+SLSLGL L+ N GKQ    I EARS+P
Subjt:  MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSS-TLRDMESVDSDSLSLGLYLQ-NAGKQA--HIFEARSMP

Query:  AVTKFWPDNSVTASMSRSFDSPDVDTTLHL
        + TKF P+NS   S  RSFD+ +VDTTLHL
Subjt:  AVTKFWPDNSVTASMSRSFDSPDVDTTLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGCAGAGTAGTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGCAAGGTTCAGACAGTTGCAGAAAGACAAGCAAAGGAGGGAGAAGAAGGAGCT
TATTAACCTGTTATCTGATTCAAACCGGGTTGATGCCTCGATAATGCATTTAGAACCCAGAAGCTCGTCGTCAACCCTGAGAGATATGGAGTCGGTGGACTCCGACTCGC
TCTCCCTTGGCCTTTACTTGCAAAATGCAGGTAAACAAGCTCATATCTTTGAAGCTAGGTCAATGCCTGCTGTGACCAAGTTCTGGCCTGACAATTCAGTCACGGCAAGT
ATGTCGAGAAGTTTCGATAGTCCAGACGTGGATACCACTCTTCATCTA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGCAGAGTAGTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGCAAGGTTCAGACAGTTGCAGAAAGACAAGCAAAGGAGGGAGAAGAAGGAGCT
TATTAACCTGTTATCTGATTCAAACCGGGTTGATGCCTCGATAATGCATTTAGAACCCAGAAGCTCGTCGTCAACCCTGAGAGATATGGAGTCGGTGGACTCCGACTCGC
TCTCCCTTGGCCTTTACTTGCAAAATGCAGGTAAACAAGCTCATATCTTTGAAGCTAGGTCAATGCCTGCTGTGACCAAGTTCTGGCCTGACAATTCAGTCACGGCAAGT
ATGTCGAGAAGTTTCGATAGTCCAGACGTGGATACCACTCTTCATCTA
Protein sequenceShow/hide protein sequence
MGRQSSEPTMVGTSIALLQARFRQLQKDKQRREKKELINLLSDSNRVDASIMHLEPRSSSSTLRDMESVDSDSLSLGLYLQNAGKQAHIFEARSMPAVTKFWPDNSVTAS
MSRSFDSPDVDTTLHL