CuGenDBv2

Gene ID	MS022336
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Eukaryotic translation initiation factor 4C
Genome location	scaffold47:2640460..2640894
RNA-Seq Expression	MS022336
Synteny	MS022336
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR001253 - Translation initiation factor 1A (eIF-1A) IPR006196 - RNA-binding domain, S1, IF1 type IPR012340 - Nucleic acid-binding, OB-fold IPR018104 - Translation initiation factor 1A (eIF-1A), conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004144524.1 eukaryotic translation initiation factor 1A [Cucumis sativus]

6.5e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_004304062.1 PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca]

6.7e-72

95.17

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGI GG+D++DE GGD YIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_022135622.1 eukaryotic translation initiation factor 1A-like [Momordica charantia]

6.5e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_022930658.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata]

1.4e-74

98.62

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

XP_031490608.1 eukaryotic translation initiation factor 1A [Nymphaea colorata]

3.0e-72

95.86

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGI GG+DD+DEGG D YIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1Y5 Eukaryotic translation initiation factor 4C

3.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A1S3C1S5 Eukaryotic translation initiation factor 4C

3.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A5A7UZV0 Eukaryotic translation initiation factor 4C

3.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A6J1C384 Eukaryotic translation initiation factor 4C

3.1e-75

99.31

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

A0A6J1JL52 Eukaryotic translation initiation factor 4C

7.0e-75

98.62

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

SwissProt top hits

e value

%identity

Alignment

P47813 Eukaryotic translation initiation factor 1A, X-chromosomal

5.2e-51

73.79

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        R LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

P47815 Eukaryotic translation initiation factor 1A

3.1e-64

84.93

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDKI
        RLLKAY ELP+  RLNEG+   +D  +EG GD+ YI+FEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDA-YIEFEDEDIDKI

P56331 Eukaryotic translation initiation factor 1A

2.3e-67

89.73

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELP+NTRLNEGI  GG+D++ +   D YIEFEDEDIDKI
Subjt:  RLLKAYSELPENTRLNEGI-VGGMDDDDEGGGDAYIEFEDEDIDKI

Q5RA42 Eukaryotic translation initiation factor 1A, X-chromosomal

5.2e-51

73.79

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        R LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal

5.2e-51

73.79

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        R LKAY ELPE+ ++NE    G  DDDE   D  I  +DEDID I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

Arabidopsis top hits

e value

%identity

Alignment

AT2G04520.1 Nucleic acid-binding, OB-fold-like protein

1.9e-72

90.34

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG ++DDD+   D Y+EFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein

2.1e-71

90.34

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein

2.1e-71

90.34

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI
        RLLKAY ELPENTRLNEGIVG +DDDD+  G+ YIEFEDEDID+I
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein

2.9e-65

92.97

Show/hide

Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA

Query:  RLLKAYSELPENTRLNEGIVGGMDDDDE
        RLLKAY ELPENTRLNEGIVG +DDDD+
Subjt:  RLLKAYSELPENTRLNEGIVGGMDDDDE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGGGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCCCA
AGTTCTCCGAATGCTAGGCAATGGCCGGTGCGAAGCGATGTGTATTGATGGGACTAAACGCCTTTGCCATATTCGGGGAAAAATGCACAAGAAGGTTTGGATTGCAGCTG
GGGATATCATTCTCGTTGGTCTCCGGGACTATCAGGACGACAAGGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGCTACCT
GAGAATACACGTCTCAACGAGGGTATTGTTGGAGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGATATTGATAAGATC

mRNA sequence

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Protein sequence

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MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELP
ENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

MS022336 (gene) of Bitter gourd (TR) v1 genome