; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022337 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022337
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationscaffold47:2642642..2644265
RNA-Seq ExpressionMS022337
SyntenyMS022337
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]4.1e-6994.48Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]8.2e-7095.86Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]8.7e-7299.31Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVK+VNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]1.5e-6895.17Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVFIKVE+LKPG+SGHTL VKVVSSKNVKVVNKGGRSAM TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]2.8e-7096.55Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein2.0e-6994.48Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284404.0e-7095.86Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein4.0e-7095.86Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT A NAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVKVVNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like4.2e-7299.31Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVK+VNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like7.5e-6995.17Show/hide
Query:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVFIKVE+LKPG+SGHTL VKVVSSKNVKVVNKGGRSAM TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.0e-4666.2Show/hide
Query:  ATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID
        A A   +  KRKPVF+KVE+LKPGT+GHTL VKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++ID
Subjt:  ATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID

Query:  MFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G03810.1 Nucleic acid-binding, OB-fold-like protein1.8e-4364.03Show/hide
Query:  TAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDM
        T A  AP KRKPVF+KV++LKPGTSGHTLIVKV+ S  VK      R + LT +P    RI+ECL+GD+TG I+FTARNDQVD+MK G TV LRNAKID+
Subjt:  TAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDM

Query:  FKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELV
        FK +MR+AVD+WGRIE+  P +FEV   NNLSLVEYE++
Subjt:  FKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELV

AT1G10590.1 Nucleic acid-binding, OB-fold-like protein3.1e-4367.65Show/hide
Query:  AKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGR+EVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein9.7e-4568.66Show/hide
Query:  RKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        DKWGR+EV EPA+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein7.9e-4771.85Show/hide
Query:  KRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        K+KPVF+KV++LKPGTSGHTL VKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
        VDKWGRIE  EPA+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein7.2e-4866.2Show/hide
Query:  ATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID
        A A   +  KRKPVF+KVE+LKPGT+GHTL VKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++ID
Subjt:  ATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKID

Query:  MFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCAGCAGTCAATGCCCCGGCGAAGAGGAAGCCGGTCTTCATAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCATACTCTCATCGTCAAGGTGGTGAG
CTCCAAAAATGTGAAGGTGGTCAATAAAGGTGGACGATCCGCGATGCTCACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAAACTGGTT
CCATAGTCTTCACAGCTCGAAATGACCAAGTTGATATCATGAAGCCAGGTAACACCGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGCTCGATGAGGTTAGCA
GTTGATAAATGGGGACGAATTGAAGTCGCCGAACCAGCTAACTTTGAGGTTAAAGAGGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTTGAAGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGCAGCAGTCAATGCCCCGGCGAAGAGGAAGCCGGTCTTCATAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCATACTCTCATCGTCAAGGTGGTGAG
CTCCAAAAATGTGAAGGTGGTCAATAAAGGTGGACGATCCGCGATGCTCACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAAACTGGTT
CCATAGTCTTCACAGCTCGAAATGACCAAGTTGATATCATGAAGCCAGGTAACACCGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGCTCGATGAGGTTAGCA
GTTGATAAATGGGGACGAATTGAAGTCGCCGAACCAGCTAACTTTGAGGTTAAAGAGGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTTGAAGAG
Protein sequenceShow/hide protein sequence
MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE