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MS022341 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022341
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold47:2663643..2663880
RNA-Seq ExpressionMS022341
SyntenyMS022341
Gene Ontology termsNA
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055206.1 U-box domain-containing protein 38-like [Cucumis melo var. makuwa]1.7e-1361.45Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S P  SSVITN NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

XP_004152547.1 U-box domain-containing protein 38 [Cucumis sativus]1.5e-1260.24Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S    SSVITN NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

XP_008438058.1 PREDICTED: U-box domain-containing protein 38-like [Cucumis melo]8.5e-1360.24Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S P  SSVI N NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

XP_023519818.1 U-box domain-containing protein 38-like [Cucurbita pepo subsp. pepo]1.1e-1259.76Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFD------ASESKY--ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LC IS SLMAD VVVSSG TF+        E  +  +LEDGS    +SVITN N+RFTILKW D+NGIEH R P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTFD------ASESKY--ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

XP_038895164.1 U-box domain-containing protein 38-like [Benincasa hispida]1.0e-1361.45Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LC IS SLMAD VVVSSG TF         D   S    EDGS P  SSVITN N+R TILKW DNNGIEH + PDY SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

TrEMBL top hitse value%identityAlignment
A0A0A0LR64 RING-type E3 ubiquitin transferase7.0e-1360.24Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S    SSVITN NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

A0A1S3AW21 RING-type E3 ubiquitin transferase4.1e-1360.24Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S P  SSVI N NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

A0A5A7ULP5 RING-type E3 ubiquitin transferase8.3e-1461.45Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S P  SSVITN NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

A0A5D3BJ60 RING-type E3 ubiquitin transferase4.1e-1360.24Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPIS SLMAD VVVSSG TF         D   S    ED S P  SSVI N NIR TILKW DNNGIEH + P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTF---------DASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

A0A6J1E734 RING-type E3 ubiquitin transferase1.2e-1259.76Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFD------ASESKY--ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LC IS SLMAD VVVSSG TF+        E  +  +LEDGS    +SVITN N+RFTILKW D+NGIEH R P Y SIE
Subjt:  ECLCPISNSLMADLVVVSSGHTFD------ASESKY--ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

SwissProt top hitse value%identityAlignment
Q0WUF6 U-box domain-containing protein 413.5e-0941.46Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPI+  LM+D VVVSSG TF+    +         +L DG+ P LS+VI N+ ++ TI  W D   ++H R PD   +E
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

Q9FJP6 U-box domain-containing protein 382.3e-0837.08Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDA----------SESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIEHRIKR
        E LCPIS S+M+D VVVSSG TF+              K   ++ S P  S++I N+N++ TI  W D  G+   + PDY ++E  +++
Subjt:  ECLCPISNSLMADLVVVSSGHTFDA----------SESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIEHRIKR

Q9STT1 U-box domain-containing protein 392.2e-1145.12Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPI+  LM+D VVV+SG TF+    +         +L DG+ P LS+VI N+ ++ TIL W D N +EH R PDY  +E
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

Q9ZV31 U-box domain-containing protein 123.4e-0437.66Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKYELEDG--SAPYLSSVIT------NINIRFTILKWRDNNGIEHLREPD
        E  CPIS  LM D V+VSSG T++    K  LE G  + P     +T      N  +R  I +W ++NGIE  + P+
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKYELEDG--SAPYLSSVIT------NINIRFTILKWRDNNGIEHLREPD

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 122.4e-0537.66Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKYELEDG--SAPYLSSVIT------NINIRFTILKWRDNNGIEHLREPD
        E  CPIS  LM D V+VSSG T++    K  LE G  + P     +T      N  +R  I +W ++NGIE  + P+
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKYELEDG--SAPYLSSVIT------NINIRFTILKWRDNNGIEHLREPD

AT3G47820.1 PLANT U-BOX 391.6e-1245.12Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPI+  LM+D VVV+SG TF+    +         +L DG+ P LS+VI N+ ++ TIL W D N +EH R PDY  +E
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

AT3G54790.1 ARM repeat superfamily protein2.0e-0437.31Show/hide
Query:  CPISNSLMADLVVVSSGHTFDASESKYELEDGSA--PYLSSVIT------NINIRFTILKWRDNNGI
        CP+S  LM D V+V+SG TFD +  K  L++G A  P    V+T      N  ++  I  W + N I
Subjt:  CPISNSLMADLVVVSSGHTFDASESKYELEDGSA--PYLSSVIT------NINIRFTILKWRDNNGI

AT5G62560.1 RING/U-box superfamily protein with ARM repeat domain2.5e-1041.46Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE
        E LCPI+  LM+D VVVSSG TF+    +         +L DG+ P LS+VI N+ ++ TI  W D   ++H R PD   +E
Subjt:  ECLCPISNSLMADLVVVSSGHTFDASESKY--------ELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIE

AT5G65200.1 plant U-box 381.6e-0937.08Show/hide
Query:  ECLCPISNSLMADLVVVSSGHTFDA----------SESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIEHRIKR
        E LCPIS S+M+D VVVSSG TF+              K   ++ S P  S++I N+N++ TI  W D  G+   + PDY ++E  +++
Subjt:  ECLCPISNSLMADLVVVSSGHTFDA----------SESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIEHRIKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGTGCCTGTGCCCGATTTCCAACTCATTAATGGCGGACCTAGTTGTGGTCTCCTCTGGCCACACCTTCGACGCCTCTGAGTCCAAGTATGAGCTTGAAGATGGGTCAGC
CCCATATCTCTCCTCCGTTATTACCAACATAAACATAAGATTCACCATTCTCAAGTGGCGCGATAACAACGGAATCGAACACCTGCGAGAGCCCGATTACAGGTCCATTG
AACACCGGATAAAGCGA
mRNA sequenceShow/hide mRNA sequence
GAGTGCCTGTGCCCGATTTCCAACTCATTAATGGCGGACCTAGTTGTGGTCTCCTCTGGCCACACCTTCGACGCCTCTGAGTCCAAGTATGAGCTTGAAGATGGGTCAGC
CCCATATCTCTCCTCCGTTATTACCAACATAAACATAAGATTCACCATTCTCAAGTGGCGCGATAACAACGGAATCGAACACCTGCGAGAGCCCGATTACAGGTCCATTG
AACACCGGATAAAGCGA
Protein sequenceShow/hide protein sequence
ECLCPISNSLMADLVVVSSGHTFDASESKYELEDGSAPYLSSVITNINIRFTILKWRDNNGIEHLREPDYRSIEHRIKR