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MS022393 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022393
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVascular-related unknown protein 1
Genome locationscaffold47:3026642..3026998
RNA-Seq ExpressionMS022393
SyntenyMS022393
Gene Ontology termsGO:0010089 - xylem development (biological process)
InterPro domainsIPR039280 - VASCULAR-RELATED UNKNOWN PROTEIN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455422.1 PREDICTED: uncharacterized protein LOC103495585 [Cucumis melo]7.0e-1955.2Show/hide
Query:  NKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFKKLT
        N +A P    S    +S  G  E+EESGWTDYLEDYF+S  +ERE SFLCSSIGSCS  DD N   N+  P        +VG V + D PK      K T
Subjt:  NKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFKKLT

Query:  RTQKIFQ-DDSLEDTATSPVHSPKV
        RTQKIF+ DDSL+DTATSP+HSPKV
Subjt:  RTQKIFQ-DDSLEDTATSPVHSPKV

XP_022136166.1 uncharacterized protein LOC111007924 [Momordica charantia]9.1e-59100Show/hide
Query:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI
        MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI
Subjt:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI

Query:  FQDDSLEDTATSPVHSPKV
        FQDDSLEDTATSPVHSPKV
Subjt:  FQDDSLEDTATSPVHSPKV

XP_022930798.1 vascular-related unknown protein 1-like [Cucurbita moschata]3.5e-1856.1Show/hide
Query:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR
        +KN  A  ++ P   ++++  G  E  ESGWT+YLEDY   S+IER+ SFL CSS GSCS D         N LSP  CSVGEV LD+P KL  FKK T 
Subjt:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR

Query:  TQKIFQDDSLEDTATSPVHSPKV
        TQ+IF DDSLEDTATSPV +PKV
Subjt:  TQKIFQDDSLEDTATSPVHSPKV

XP_022989009.1 vascular-related unknown protein 1-like [Cucurbita maxima]6.0e-1856.91Show/hide
Query:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR
        +KN    P  E S++AA    G  E EESGWT+YLEDY   S+IER+ SFL CSS GSCS D         N L+P  CSVGEV LD+P KL    K T 
Subjt:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR

Query:  TQKIFQDDSLEDTATSPVHSPKV
        TQ IF DDSLEDTATSPV +PKV
Subjt:  TQKIFQDDSLEDTATSPVHSPKV

XP_038888852.1 vascular-related unknown protein 1-like [Benincasa hispida]2.2e-2053.08Show/hide
Query:  MEKN------KDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPT-----LCSVGEVFLDSPKKLI
        MEKN       D+PP    ++++A +  G  E+EESGWTDYLEDYFSS     E S+LCSSIGSCS   N   N+ +P         +G++  D P KL 
Subjt:  MEKN------KDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPT-----LCSVGEVFLDSPKKLI

Query:  CFKKLTRTQKIFQDDSLEDTATSPVHSPKV
         FKK TRTQKIF+DDSL+DTATSP+HSPKV
Subjt:  CFKKLTRTQKIFQDDSLEDTATSPVHSPKV

TrEMBL top hitse value%identityAlignment
A0A0A0K3L1 Uncharacterized protein3.8e-1853.12Show/hide
Query:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFK
        ME N  A    + S    +S     E+EESGWTDYLEDYF+S  +ERE SFLCSSIGSCS  DD N   N+  P+       ++G V + D PK      
Subjt:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFK

Query:  KLTRTQKIFQ-DDSLEDTATSPVHSPKV
        K TRTQKIF+ DDSL+DTATSP+HSPKV
Subjt:  KLTRTQKIFQ-DDSLEDTATSPVHSPKV

A0A1S3C0F7 uncharacterized protein LOC1034955853.4e-1955.2Show/hide
Query:  NKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFKKLT
        N +A P    S    +S  G  E+EESGWTDYLEDYF+S  +ERE SFLCSSIGSCS  DD N   N+  P        +VG V + D PK      K T
Subjt:  NKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCS--DDGNTTTNVLSPTL-----CSVGEV-FLDSPKKLICFKKLT

Query:  RTQKIFQ-DDSLEDTATSPVHSPKV
        RTQKIF+ DDSL+DTATSP+HSPKV
Subjt:  RTQKIFQ-DDSLEDTATSPVHSPKV

A0A6J1C2S1 uncharacterized protein LOC1110079244.4e-59100Show/hide
Query:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI
        MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI
Subjt:  MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKI

Query:  FQDDSLEDTATSPVHSPKV
        FQDDSLEDTATSPVHSPKV
Subjt:  FQDDSLEDTATSPVHSPKV

A0A6J1ESI7 Uncharacterized protein1.7e-1856.1Show/hide
Query:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR
        +KN  A  ++ P   ++++  G  E  ESGWT+YLEDY   S+IER+ SFL CSS GSCS D         N LSP  CSVGEV LD+P KL  FKK T 
Subjt:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR

Query:  TQKIFQDDSLEDTATSPVHSPKV
        TQ+IF DDSLEDTATSPV +PKV
Subjt:  TQKIFQDDSLEDTATSPVHSPKV

A0A6J1JN61 Uncharacterized protein2.9e-1856.91Show/hide
Query:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR
        +KN    P  E S++AA    G  E EESGWT+YLEDY   S+IER+ SFL CSS GSCS D         N L+P  CSVGEV LD+P KL    K T 
Subjt:  EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCSDD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTR

Query:  TQKIFQDDSLEDTATSPVHSPKV
        TQ IF DDSLEDTATSPV +PKV
Subjt:  TQKIFQDDSLEDTATSPVHSPKV

SwissProt top hitse value%identityAlignment
Q9LSZ3 Vascular-related unknown protein 11.2e-0539.05Show/hide
Query:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV
        GG  +EESGWT YL+D+ +         +  ++KS       S S   +  T+  S      G+ F ++ P KL   +   RT+KI +DDSLEDTA+SPV
Subjt:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV

Query:  HSPKV
        +SPKV
Subjt:  HSPKV

Arabidopsis top hitse value%identityAlignment
AT3G21710.1 unknown protein8.6e-0739.05Show/hide
Query:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV
        GG  +EESGWT YL+D+ +         +  ++KS       S S   +  T+  S      G+ F ++ P KL   +   RT+KI +DDSLEDTA+SPV
Subjt:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV

Query:  HSPKV
        +SPKV
Subjt:  HSPKV

AT3G21710.2 unknown protein8.6e-0739.05Show/hide
Query:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV
        GG  +EESGWT YL+D+ +         +  ++KS       S S   +  T+  S      G+ F ++ P KL   +   RT+KI +DDSLEDTA+SPV
Subjt:  GGGEEEESGWTDYLEDYFS-------SSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVF-LDSPKKLICFKKLTRTQKIFQDDSLEDTATSPV

Query:  HSPKV
        +SPKV
Subjt:  HSPKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAACAAGGATGCGCCGCCGCTGGAAGAGCCCTCCGCCGCCGCCGCCAATTCCGGCGGAGGAGGAGGAGAAGAAGAAGAGAGCGGTTGGACGGATTACTTGGA
AGATTATTTCAGCTCCTCAGATATTGAGAGAGAGAAGAGCTTTTTGTGTTCGAGTATTGGGAGCTGTTCAGACGATGGCAATACGACGACCAATGTTTTAAGTCCAACGT
TGTGTTCTGTTGGGGAAGTTTTTTTGGATTCTCCTAAGAAGCTAATTTGTTTCAAGAAATTAACAAGAACCCAGAAGATTTTTCAAGATGATTCCTTGGAAGATACCGCT
ACTTCTCCTGTCCACAGTCCAAAAGTA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAACAAGGATGCGCCGCCGCTGGAAGAGCCCTCCGCCGCCGCCGCCAATTCCGGCGGAGGAGGAGGAGAAGAAGAAGAGAGCGGTTGGACGGATTACTTGGA
AGATTATTTCAGCTCCTCAGATATTGAGAGAGAGAAGAGCTTTTTGTGTTCGAGTATTGGGAGCTGTTCAGACGATGGCAATACGACGACCAATGTTTTAAGTCCAACGT
TGTGTTCTGTTGGGGAAGTTTTTTTGGATTCTCCTAAGAAGCTAATTTGTTTCAAGAAATTAACAAGAACCCAGAAGATTTTTCAAGATGATTCCTTGGAAGATACCGCT
ACTTCTCCTGTCCACAGTCCAAAAGTA
Protein sequenceShow/hide protein sequence
MEKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFLCSSIGSCSDDGNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKIFQDDSLEDTA
TSPVHSPKV