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MS022402 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022402
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB box-type domain-containing protein
Genome locationscaffold47:3076625..3076996
RNA-Seq ExpressionMS022402
SyntenyMS022402
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572307.1 B-box domain protein 30, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3662.22Show/hide
Query:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI
        MC+GV +E       R   T    +  GG +P PCELCGSRASLYC AD+AYLC KCDK VH ANFLA RHVRCLLC+TCQ  T+RYLLGAS+E+VLP+I
Subjt:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI

Query:  ------SRNFQNHCDRDDDDDQNCSQLLKTPCLFL
               RNFQN+    DD DQN SQLL+TPCLFL
Subjt:  ------SRNFQNHCDRDDDDDQNCSQLLKTPCLFL

KGN43541.1 hypothetical protein Csa_020490 [Cucumis sativus]5.8e-4068.66Show/hide
Query:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLP--
        MC+GVE+E      +R   T+D   AAGG +PV CELCGSRASLYC AD+AYLCGKCDK VH ANFLA RHVRCLLC+TCQSHTQRYLLGAS+E+VLP  
Subjt:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLP--

Query:  --NISRNFQN-HCDRDDDDDQNCSQLLKTPCLFL
          +  RNF N HCD  D   QNCSQ+LKTPCLFL
Subjt:  --NISRNFQN-HCDRDDDDDQNCSQLLKTPCLFL

XP_008455408.1 PREDICTED: B-box zinc finger protein 21 [Cucumis melo]2.0e-4068.94Show/hide
Query:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-
        MC+GVE+E  + P     T+D  +A GG +PV CELCGSRASLYC AD+AYLCGKCDK VH ANFLA RHVRCLLC+TCQSHTQRYLLGAS+E+V+P+I 
Subjt:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-

Query:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL
           RNF N HCD  D   QNCSQ+LKTPCLFL
Subjt:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL

XP_022953004.1 B-box domain protein 30 [Cucurbita moschata]1.9e-3571.3Show/hide
Query:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL
        GG +P PCELCGSRASLYC AD+AYLC KCDK VH ANFLA RHVRCLLC+TCQ  T+RYLLGAS+E+VLP+I       RNFQN+    DD DQN SQL
Subjt:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL

Query:  LKTPCLFL
        L+TPCLFL
Subjt:  LKTPCLFL

XP_023511647.1 B-box domain protein 30-like [Cucurbita pepo subsp. pepo]7.8e-3762.22Show/hide
Query:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI
        MC+GV +E       R   T    +  GG +P PCELCGSRASLYC AD+AYLC KCDK VH ANFLA RHVRCLLC+TCQ  T+RY+LGAS+E+VLP+I
Subjt:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI

Query:  ------SRNFQNHCDRDDDDDQNCSQLLKTPCLFL
               RNFQN+    DD DQN SQLLKTPCLFL
Subjt:  ------SRNFQNHCDRDDDDDQNCSQLLKTPCLFL

TrEMBL top hitse value%identityAlignment
A0A0A0K6V9 B box-type domain-containing protein2.8e-4068.66Show/hide
Query:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLP--
        MC+GVE+E      +R   T+D   AAGG +PV CELCGSRASLYC AD+AYLCGKCDK VH ANFLA RHVRCLLC+TCQSHTQRYLLGAS+E+VLP  
Subjt:  MCRGVERE-----TLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLP--

Query:  --NISRNFQN-HCDRDDDDDQNCSQLLKTPCLFL
          +  RNF N HCD  D   QNCSQ+LKTPCLFL
Subjt:  --NISRNFQN-HCDRDDDDDQNCSQLLKTPCLFL

A0A1S3C0U6 B-box zinc finger protein 219.6e-4168.94Show/hide
Query:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-
        MC+GVE+E  + P     T+D  +A GG +PV CELCGSRASLYC AD+AYLCGKCDK VH ANFLA RHVRCLLC+TCQSHTQRYLLGAS+E+V+P+I 
Subjt:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-

Query:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL
           RNF N HCD  D   QNCSQ+LKTPCLFL
Subjt:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL

A0A5A7TAC0 B-box zinc finger protein 219.6e-4168.94Show/hide
Query:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-
        MC+GVE+E  + P     T+D  +A GG +PV CELCGSRASLYC AD+AYLCGKCDK VH ANFLA RHVRCLLC+TCQSHTQRYLLGAS+E+V+P+I 
Subjt:  MCRGVERETLRPPP----TSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI-

Query:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL
           RNF N HCD  D   QNCSQ+LKTPCLFL
Subjt:  --SRNFQN-HCDRDDDDDQNCSQLLKTPCLFL

A0A6J1GNE7 B-box domain protein 309.3e-3671.3Show/hide
Query:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL
        GG +P PCELCGSRASLYC AD+AYLC KCDK VH ANFLA RHVRCLLC+TCQ  T+RYLLGAS+E+VLP+I       RNFQN+    DD DQN SQL
Subjt:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL

Query:  LKTPCLFL
        L+TPCLFL
Subjt:  LKTPCLFL

A0A6J1HUR8 B-box domain protein 301.9e-3370.37Show/hide
Query:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL
        GG +P PCELCGSRASLYC AD+AYLC KCDK VH ANFLA RHVRCLLC+TCQ  T+RYLLGAS+E+VLP+I       RNFQN     D  DQN SQL
Subjt:  GGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI------SRNFQNHCDRDDDDDQNCSQL

Query:  LKTPCLFL
        LKT CLFL
Subjt:  LKTPCLFL

SwissProt top hitse value%identityAlignment
Q1G3I2 B-box domain protein 309.6e-2248.45Show/hide
Query:  MCRGVERETLRPPPTS--DGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI
        MCRG E+E  R         +     + PV CELCG  A++YC AD A+LC KCD+WVH ANFLA+RH+R ++C+TC+  T+R L+G +  +VLP I
Subjt:  MCRGVERETLRPPPTS--DGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI

Q39057 Zinc finger protein CONSTANS2.7e-0840.28Show/hide
Query:  SDGISAAGGRNPVPCELCGSRA-SLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGA
        S+ I +       PC+ C S A ++YC AD AYLC  CD  VH AN +A RH R  +C +C+     +L  A
Subjt:  SDGISAAGGRNPVPCELCGSRA-SLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGA

Q9C7E8 Zinc finger protein CONSTANS-LIKE 153.5e-0853.06Show/hide
Query:  VPCELCGSR-ASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTC
        VPC+ CG R A L+C AD A LC  CD+ VH AN L+++HVR  +C  C
Subjt:  VPCELCGSR-ASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTC

Q9LJB7 B-box zinc finger protein 321.5e-1151.79Show/hide
Query:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG
        CELCG+ A L+CAAD A+LC  CD   H +NFL  RH R ++C  C+S TQ ++ G
Subjt:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG

Q9LRM4 B-box domain protein 316.9e-2042.42Show/hide
Query:  MCRGVERETLRPPPTSDGISAAGGRN-------PVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG-ASVEIVL
        MCRG+  E  R    SDG    G R+       PV CELC   AS++C AD A+LC KCD+WVHGANFLA RHVR +LC++CQ  T+R L+G     +VL
Subjt:  MCRGVERETLRPPPTSDGISAAGGRN-------PVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG-ASVEIVL

Query:  PNISRNFQNHCDRDDDDDQNCSQLLKTPCLFL
        P+++   +   +   + D +     + P +FL
Subjt:  PNISRNFQNHCDRDDDDDQNCSQLLKTPCLFL

Arabidopsis top hitse value%identityAlignment
AT3G21150.1 B-box 321.1e-1251.79Show/hide
Query:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG
        CELCG+ A L+CAAD A+LC  CD   H +NFL  RH R ++C  C+S TQ ++ G
Subjt:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG

AT3G21890.1 B-box type zinc finger family protein4.9e-2142.42Show/hide
Query:  MCRGVERETLRPPPTSDGISAAGGRN-------PVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG-ASVEIVL
        MCRG+  E  R    SDG    G R+       PV CELC   AS++C AD A+LC KCD+WVHGANFLA RHVR +LC++CQ  T+R L+G     +VL
Subjt:  MCRGVERETLRPPPTSDGISAAGGRN-------PVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLG-ASVEIVL

Query:  PNISRNFQNHCDRDDDDDQNCSQLLKTPCLFL
        P+++   +   +   + D +     + P +FL
Subjt:  PNISRNFQNHCDRDDDDDQNCSQLLKTPCLFL

AT4G15248.1 B-box type zinc finger family protein6.8e-2348.45Show/hide
Query:  MCRGVERETLRPPPTS--DGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI
        MCRG E+E  R         +     + PV CELCG  A++YC AD A+LC KCD+WVH ANFLA+RH+R ++C+TC+  T+R L+G +  +VLP I
Subjt:  MCRGVERETLRPPPTS--DGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNI

AT4G27310.1 B-box type zinc finger family protein8.4e-1360Show/hide
Query:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHT
        C+LC   A +YC +D A LC  CD  VHGANFL  +H RCLLCS CQS T
Subjt:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHT

AT5G54470.1 B-box type zinc finger family protein1.5e-1446.67Show/hide
Query:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHT----QRYLLGASVEIVLPNISRNFQNHCDRDDDDDQNCSQ
        CELC   A +YC +D A LC  CD  VHGANFL  +H+RCLLCS CQSHT        LG +V I    ++R   N+       DQN +Q
Subjt:  CELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHT----QRYLLGASVEIVLPNISRNFQNHCDRDDDDDQNCSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGAGGGGTAGAACGGGAAACCCTCCGGCCGCCACCGACCTCCGACGGGATATCGGCGGCGGGGGGGCGTAATCCGGTGCCGTGCGAGCTGTGCGGGTCGAGGGC
GTCGCTGTACTGCGCAGCGGACGACGCGTATTTGTGCGGAAAGTGCGACAAATGGGTCCATGGGGCGAATTTCTTGGCGCAGCGGCACGTCCGGTGCCTGCTGTGCAGCA
CGTGCCAGAGCCACACGCAGAGGTATCTGTTGGGAGCGTCGGTGGAGATTGTGCTCCCAAATATTTCGAGAAATTTCCAAAATCACTGTGATCGAGACGATGACGATGAT
CAAAATTGCTCGCAACTATTGAAAACGCCGTGTCTGTTTCTT
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGAGGGGTAGAACGGGAAACCCTCCGGCCGCCACCGACCTCCGACGGGATATCGGCGGCGGGGGGGCGTAATCCGGTGCCGTGCGAGCTGTGCGGGTCGAGGGC
GTCGCTGTACTGCGCAGCGGACGACGCGTATTTGTGCGGAAAGTGCGACAAATGGGTCCATGGGGCGAATTTCTTGGCGCAGCGGCACGTCCGGTGCCTGCTGTGCAGCA
CGTGCCAGAGCCACACGCAGAGGTATCTGTTGGGAGCGTCGGTGGAGATTGTGCTCCCAAATATTTCGAGAAATTTCCAAAATCACTGTGATCGAGACGATGACGATGAT
CAAAATTGCTCGCAACTATTGAAAACGCCGTGTCTGTTTCTT
Protein sequenceShow/hide protein sequence
MCRGVERETLRPPPTSDGISAAGGRNPVPCELCGSRASLYCAADDAYLCGKCDKWVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASVEIVLPNISRNFQNHCDRDDDDD
QNCSQLLKTPCLFL