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MS022408 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022408
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold47:3107975..3108106
RNA-Seq ExpressionMS022408
SyntenyMS022408
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI18543.1 hypothetical protein PRUPE_3G221900 [Prunus persica]7.3e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

VVA33697.1 PREDICTED: pentatricopeptide [Prunus dulcis]7.3e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

XP_007216378.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Prunus persica]7.3e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

XP_034208439.1 putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [Prunus dulcis]7.3e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

XP_038887372.1 pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida]7.3e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFGN+D+AR VFDKM ERDL S N++ISGYV+NN  +EA
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

TrEMBL top hitse value%identityAlignment
A0A251Q417 DYW_deaminase domain-containing protein3.6e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

A0A314Y200 Pentatricopeptide repeat-containing protein1.8e-0566.67Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKN  P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

A0A5E4G1S8 PREDICTED: pentatricopeptide3.6e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

A0A5E4G1W2 PREDICTED: pentatricopeptide3.6e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

M5WUT9 DYW_deaminase domain-containing protein3.6e-0669.23Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

SwissProt top hitse value%identityAlignment
A8MQA3 Pentatricopeptide repeat-containing protein At4g210653.2e-0456.76Show/hide
Query:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Subjt:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial5.5e-0447.62Show/hide
Query:  GIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        G+ K G +D AR +FD M ER+++S N++I+GY +NN+  EA
Subjt:  GIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic8.4e-0553.85Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        K G+++ AR +FD MLER++VS NS+I  YV+N  P EA
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

Q9FLZ9 Pentatricopeptide repeat-containing protein At5g393503.2e-0456.25Show/hide
Query:  FGNMDLARDVFDKMLERDLVSLNSVISGYVKN
        FG +++ARDVFD M  RD++S N++ISGY +N
Subjt:  FGNMDLARDVFDKMLERDLVSLNSVISGYVKN

Q9SY02 Pentatricopeptide repeat-containing protein At4g027504.2e-0452.63Show/hide
Query:  LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN
        + G  + G  +LAR +FD+M ERDLVS N +I GYV+N
Subjt:  LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein6.0e-0653.85Show/hide
Query:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        K G+++ AR +FD MLER++VS NS+I  YV+N  P EA
Subjt:  KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0552.63Show/hide
Query:  LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN
        + G  + G  +LAR +FD+M ERDLVS N +I GYV+N
Subjt:  LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-0556.76Show/hide
Query:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Subjt:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

AT4G21065.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-0556.76Show/hide
Query:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA
        G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Subjt:  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-0556.25Show/hide
Query:  FGNMDLARDVFDKMLERDLVSLNSVISGYVKN
        FG +++ARDVFD M  RD++S N++ISGY +N
Subjt:  FGNMDLARDVFDKMLERDLVSLNSVISGYVKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAGGTGGAATTTGGAAGTTTGGGAACATGGATCTTGCTCGGGATGTGTTTGATAAAATGCTCGAGAGGGATTTAGTTTCCTTGAATTCTGTGATTTCTGGTTACGTTAA
GAACAACAAACCAATAGAAGCT
mRNA sequenceShow/hide mRNA sequence
TTAGGTGGAATTTGGAAGTTTGGGAACATGGATCTTGCTCGGGATGTGTTTGATAAAATGCTCGAGAGGGATTTAGTTTCCTTGAATTCTGTGATTTCTGGTTACGTTAA
GAACAACAAACCAATAGAAGCT
Protein sequenceShow/hide protein sequence
LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA