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MS022500 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022500
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box protein FBP24
Genome locationscaffold720:77367..77988
RNA-Seq ExpressionMS022500
SyntenyMS022500
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0048316 - seed development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box
IPR031050 - MADS-box protein FBP24/AGL63/defh21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134531.2 MADS-box protein FBP24 isoform X1 [Cucumis sativus]1.8e-3067.26Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ GSR P+     N  DPEEL  Q+R M+KET++LQ+ LQRYT +D S   LRDLD++++RLQNSLNRVRARKSEL QQQ+DNL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        ILEDENEQIYH++
Subjt:  ILEDENEQIYHMV

XP_011658350.1 MADS-box protein FBP24 isoform X3 [Cucumis sativus]3.0e-3067.26Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ GSR P+     N  DPEEL  Q+R M+KET++LQ+ LQRYT +D S   LRDLD++++RLQNSLNRVRARKSEL QQQ+DNL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        ILEDENEQIYH++
Subjt:  ILEDENEQIYHMV

XP_022146643.1 MADS-box protein FBP24 [Momordica charantia]1.6e-5299.12Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        ILEDENEQIYHM+
Subjt:  ILEDENEQIYHMV

XP_038883280.1 MADS-box protein FBP24 isoform X1 [Benincasa hispida]2.0e-2965.49Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ GSR P++    N  DPEEL  ++R MRK+T++LQ+ LQRYT +D S   LRDLD++++RLQNSLNRVRARKSEL QQQ+DNL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        +LEDENEQIYH++
Subjt:  ILEDENEQIYHMV

XP_038883284.1 MADS-box protein FBP24 isoform X5 [Benincasa hispida]2.0e-2965.49Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ GSR P++    N  DPEEL  ++R MRK+T++LQ+ LQRYT +D S   LRDLD++++RLQNSLNRVRARKSEL QQQ+DNL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        +LEDENEQIYH++
Subjt:  ILEDENEQIYHMV

TrEMBL top hitse value%identityAlignment
A0A0A0KPC6 K-box domain-containing protein1.5e-3067.26Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ GSR P+     N  DPEEL  Q+R M+KET++LQ+ LQRYT +D S   LRDLD++++RLQNSLNRVRARKSEL QQQ+DNL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        ILEDENEQIYH++
Subjt:  ILEDENEQIYHMV

A0A6J1CYP1 MADS-box protein FBP248.0e-5399.12Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        ILEDENEQIYHM+
Subjt:  ILEDENEQIYHMV

A0A6J1EEN0 MADS-box protein FBP24-like isoform X44.7e-2965.79Show/hide
Query:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE
        SMDQII+RYQI++ G+  PD+    N  DPEEL   +R MRK+T+ELQ+ LQRYT EDLS  QLRDLDE+++RLQ SLNRVRARKSE+  QQ++NL+RKE
Subjt:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE

Query:  KILEDENEQIYHMV
        K+LEDENEQIYH++
Subjt:  KILEDENEQIYHMV

A0A6J1KTV0 MADS-box protein FBP24-like isoform X23.6e-2966.37Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        MDQII+RYQI++ G+  PD+    N  DPEEL   +R MRK+T+ELQ+ LQRYT EDLS  QLRDLDE+++RLQ SLNRVRARKSE+ QQQ++NL+RKEK
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIYHMV
        +LEDENEQIYH++
Subjt:  ILEDENEQIYHMV

A0A6J1KX33 MADS-box protein FBP24-like isoform X11.2e-2966.67Show/hide
Query:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE
        SMDQII+RYQI++ G+  PD+    N  DPEEL   +R MRK+T+ELQ+ LQRYT EDLS  QLRDLDE+++RLQ SLNRVRARKSE+ QQQ++NL+RKE
Subjt:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE

Query:  KILEDENEQIYHMV
        K+LEDENEQIYH++
Subjt:  KILEDENEQIYHMV

SwissProt top hitse value%identityAlignment
Q8RVL4 MADS-box protein defh212.0e-1643.75Show/hide
Query:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE
        SM QII RY +   G         G   D +++  ++ +M++ET  LQ+ LQRY G+DLS ++  +L E++  L  SLN+VRARK EL  +QM+NLKR E
Subjt:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE

Query:  KILEDENEQIYH
         +LE EN+++YH
Subjt:  KILEDENEQIYH

Q8VWM8 MADS-box protein ZMM178.3e-1537.72Show/hide
Query:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE
        S+ ++I++YQ     S   +  HD      +++  ++ +M+ E E+L+  ++RYTG+DLS++ L D+ +++ +L+ S+++VRARK +L  QQ+DNL+RKE
Subjt:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE

Query:  KILEDENEQIYHMV
        +ILED+N  +Y M+
Subjt:  KILEDENEQIYHMV

Q9ATE5 MADS-box protein FBP241.4e-1745.54Show/hide
Query:  HSMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRK
        HSM QII RY +   G+  P       + +  +L  ++ KMR++T  LQ+ LQRY G+DLS  Q  +L+E++ +L+++LN++RARK EL QQQM+NLK+ 
Subjt:  HSMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRK

Query:  EKILEDENEQIY
        EK+LE EN  +Y
Subjt:  EKILEDENEQIY

Q9LLA7 MADS-box protein AeAP3-2 (Fragment)1.4e-1436.84Show/hide
Query:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE
        SM +II RYQ  L+G+ AP         D +++  +I +M+ E ++LQ  ++ + GEDL+++ + ++ +++ +L+ S+N+VR+RK +L QQQ+DNL+RKE
Subjt:  SMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKE

Query:  KILEDENEQIYHMV
         +LE++N ++Y ++
Subjt:  KILEDENEQIYHMV

Q9XGJ4 MADS-box protein GGM134.5e-1336.21Show/hide
Query:  SHSMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKR
        S SM +II+RYQ  ++G+R         + D + L  ++ +M+ E E+LQ  ++R  GEDL+++ + +L  +  +L+++ +RVR+RK++L  QQ++NL+R
Subjt:  SHSMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKR

Query:  KEKILEDENEQIYHMV
        KE+ILED+N  +  ++
Subjt:  KEKILEDENEQIYHMV

Arabidopsis top hitse value%identityAlignment
AT5G23260.1 K-box region and MADS-box transcription factor family protein9.7e-1138.18Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        M Q+I RY +   G R PD  HD    D E+L  ++  +R+ET  L++RL+ + G DL++I   +LD ++ +L++S+ +VR RK     QQ++NL RK +
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIY
        +LE++N  +Y
Subjt:  ILEDENEQIY

AT5G23260.2 K-box region and MADS-box transcription factor family protein3.2e-1440.91Show/hide
Query:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK
        M Q+I RY +   G R PD  HD    D E+L  ++  +R+ET  L++RL+ + G DL++I   +LD ++ +L++S+ +VR RK+EL QQQ++NL RK +
Subjt:  MDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEK

Query:  ILEDENEQIY
        +LE++N  +Y
Subjt:  ILEDENEQIY

AT5G62165.1 AGAMOUS-like 421.3e-0731.09Show/hide
Query:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ
        F S  M + I+RY       R   + H+ ++ D     ++L  +   M  + E L+   ++  G+ +++  L +L E+D +LQ SL +VR RK++LF++Q
Subjt:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ

Query:  MDNLKRKEKILEDENEQIY
        ++ LK KEK L +EN +++
Subjt:  MDNLKRKEKILEDENEQIY

AT5G62165.2 AGAMOUS-like 421.3e-0731.09Show/hide
Query:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ
        F S  M + I+RY       R   + H+ ++ D     ++L  +   M  + E L+   ++  G+ +++  L +L E+D +LQ SL +VR RK++LF++Q
Subjt:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ

Query:  MDNLKRKEKILEDENEQIY
        ++ LK KEK L +EN +++
Subjt:  MDNLKRKEKILEDENEQIY

AT5G62165.3 AGAMOUS-like 421.3e-0731.09Show/hide
Query:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ
        F S  M + I+RY       R   + H+ ++ D     ++L  +   M  + E L+   ++  G+ +++  L +L E+D +LQ SL +VR RK++LF++Q
Subjt:  FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDP----EELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQ

Query:  MDNLKRKEKILEDENEQIY
        ++ LK KEK L +EN +++
Subjt:  MDNLKRKEKILEDENEQIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCATTTCTCACAGCATGGATCAAATCATAAAAAGGTATCAGATTTCACTGGCCGGGAGCCGAGCTCCGGACCGGCTGCACGACGGCAACGACCCGGACCCGGAAGAACT
GGCGAGCCAAATTCGGAAAATGAGAAAAGAGACGGAGGAGCTTCAGGTGAGATTGCAGCGGTACACGGGGGAGGATCTCAGCGCCATTCAGCTCCGCGATTTGGATGAAA
TGGACCACCGTCTCCAAAACTCTCTCAATCGAGTTCGTGCCAGGAAGTCTGAGCTGTTTCAGCAGCAAATGGACAATCTCAAGAGAAAGGAGAAAATTCTGGAGGATGAA
AATGAGCAAATATATCATATGGTA
mRNA sequenceShow/hide mRNA sequence
TTCATTTCTCACAGCATGGATCAAATCATAAAAAGGTATCAGATTTCACTGGCCGGGAGCCGAGCTCCGGACCGGCTGCACGACGGCAACGACCCGGACCCGGAAGAACT
GGCGAGCCAAATTCGGAAAATGAGAAAAGAGACGGAGGAGCTTCAGGTGAGATTGCAGCGGTACACGGGGGAGGATCTCAGCGCCATTCAGCTCCGCGATTTGGATGAAA
TGGACCACCGTCTCCAAAACTCTCTCAATCGAGTTCGTGCCAGGAAGTCTGAGCTGTTTCAGCAGCAAATGGACAATCTCAAGAGAAAGGAGAAAATTCTGGAGGATGAA
AATGAGCAAATATATCATATGGTA
Protein sequenceShow/hide protein sequence
FISHSMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEKILEDE
NEQIYHMV