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MS022501 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022501
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box transcription factor
Genome locationscaffold720:78082..78258
RNA-Seq ExpressionMS022501
SyntenyMS022501
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0048316 - seed development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR031050 - MADS-box protein FBP24/AGL63/defh21-like
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146643.1 MADS-box protein FBP24 [Momordica charantia]2.8e-24100Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

XP_022926519.1 MADS-box protein FBP24-like isoform X1 [Cucurbita moschata]4.4e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

XP_022926520.1 MADS-box protein FBP24-like isoform X2 [Cucurbita moschata]4.4e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

XP_022926522.1 MADS-box protein FBP24-like isoform X4 [Cucurbita moschata]4.4e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

XP_023518267.1 MADS-box protein FBP24-like isoform X1 [Cucurbita pepo subsp. pepo]4.4e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

TrEMBL top hitse value%identityAlignment
A0A6J1CYP1 MADS-box protein FBP241.3e-24100Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

A0A6J1EEN0 MADS-box protein FBP24-like isoform X42.1e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

A0A6J1EF55 MADS-box protein FBP24-like isoform X32.1e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

A0A6J1KTV0 MADS-box protein FBP24-like isoform X22.1e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

A0A6J1KX33 MADS-box protein FBP24-like isoform X12.1e-2294.92Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKIAI+RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQI LIVFSSNGK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

SwissProt top hitse value%identityAlignment
Q6H711 MADS-box transcription factor 292.1e-1974.58Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IKRIEN T RQVTFSKRR GL KK +EL+VLCDA++G+++FSS GK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

Q8RVL4 MADS-box protein defh216.6e-2181.36Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI +KRIEN T+RQVTFSKRR+GL KKTHELSVLCDAQIGLIVFS+ GK  EYC+
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

Q8VWM8 MADS-box protein ZMM172.1e-1974.58Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IKRIEN T RQVTFSKRR GL KK +EL+VLCDA++G+++FSS GK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

Q9ATE5 MADS-box protein FBP245.4e-2386.44Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI +KRIEN+T+RQVTFSKRRAGL KKTHELSVLCDAQIGLI+FSS GK FEYCS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

Q9XGJ4 MADS-box protein GGM135.6e-2079.66Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IKRIEN T RQVTFSKRR GL KK HELSVLCDA++GLI+FSS+GK FEY S
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

Arabidopsis top hitse value%identityAlignment
AT1G69120.1 K-box region and MADS-box transcription factor family protein8.3e-1970.18Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEY
        MGRG++ +KRIEN+  RQVTFSKRRAGL KK HE+SVLCDA++ L+VFS  GK FEY
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEY

AT5G23260.1 K-box region and MADS-box transcription factor family protein5.7e-2076.27Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IK+IEN+T RQVTFSKRR GL KKT ELS+LCDA IGLIVFS+ GK  E+CS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

AT5G23260.2 K-box region and MADS-box transcription factor family protein5.7e-2076.27Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IK+IEN+T RQVTFSKRR GL KKT ELS+LCDA IGLIVFS+ GK  E+CS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

AT5G23260.3 K-box region and MADS-box transcription factor family protein5.7e-2076.27Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS
        MGRGKI IK+IEN+T RQVTFSKRR GL KKT ELS+LCDA IGLIVFS+ GK  E+CS
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS

AT5G60910.1 AGAMOUS-like 83.7e-1971.93Show/hide
Query:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEY
        MGRG++ +KRIEN+  RQVTFSKRR+GL KK HE+SVLCDA++ LIVFSS GK FEY
Subjt:  MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAGGAAAAATCGCAATCAAGAGGATCGAGAACCGGACGACAAGGCAAGTTACTTTCTCGAAGCGGCGAGCTGGGCTTTTCAAGAAGACTCATGAACTCTCCGT
TCTGTGCGACGCTCAGATCGGACTCATCGTCTTCTCCAGCAACGGAAAGTGCTTCGAATACTGCTCC
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAGGAAAAATCGCAATCAAGAGGATCGAGAACCGGACGACAAGGCAAGTTACTTTCTCGAAGCGGCGAGCTGGGCTTTTCAAGAAGACTCATGAACTCTCCGT
TCTGTGCGACGCTCAGATCGGACTCATCGTCTTCTCCAGCAACGGAAAGTGCTTCGAATACTGCTCC
Protein sequenceShow/hide protein sequence
MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCS