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MS022523 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022523
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold720:271989..272294
RNA-Seq ExpressionMS022523
SyntenyMS022523
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]5.1e-1032.63Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
        W  PP + W LNTDASWS   ++GG+GW++    GE++ AGN  +     +  LE+  ++ GL++  +++R   +   DS+EV +++ ++  D +
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.3e-1238.1Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQVDDFSEIQW
        W PP  ++W LNT+A+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP      DS+E   +L+ Q  D +EI W
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQVDDFSEIQW

Query:  LVDEI
        L++EI
Subjt:  LVDEI

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.1e-0735.87Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQV
        W PP  ++W LNTDA+W +     G+GW++R   GEVI  G +++    ++  LE+ A+ EGLR +     RP      DS+E   +L+  V
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.0e-2349.52Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQW
        W PPP+H WTLN DASWS S   GG+GW++RSW G+++ AGN+ V+ C +VK+LE  A+LEGLR L N     P+    DS EV  +LN + +D ++  W
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQW

Query:  LVDEI
        +V+EI
Subjt:  LVDEI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.5e-1237.5Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------DSIEVAQILNEQVD
        W PP  ++W LNTDA+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP     C       DS+E   +L+ Q  
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------DSIEVAQILNEQVD

Query:  DFSEIQWLVDEI
        D +EI WL++EI
Subjt:  DFSEIQWLVDEI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.5e-1238.1Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQVDDFSEIQW
        W PP  ++W LNT+A+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP      DS+E   +L+ Q  D +EI W
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQVDDFSEIQW

Query:  LVDEI
        L++EI
Subjt:  LVDEI

A0A6J1CQG0 uncharacterized protein LOC1110132162.5e-1032.63Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS
        W  PP + W LNTDASWS   ++GG+GW++    GE++ AGN  +     +  LE+  ++ GL++  +++R   +   DS+EV +++ ++  D +
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW--LENRPTPFPICDSIEVAQILNEQVDDFS

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X15.2e-0835.87Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQV
        W PP  ++W LNTDA+W +     G+GW++R   GEVI  G +++    ++  LE+ A+ EGLR +     RP      DS+E   +L+  V
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPICDSIEVAQILNEQV

A0A6J1DNV9 uncharacterized protein LOC1110224032.0e-2349.52Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQW
        W PPP+H WTLN DASWS S   GG+GW++RSW G+++ AGN+ V+ C +VK+LE  A+LEGLR L N     P+    DS EV  +LN + +D ++  W
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRPTPFPI---CDSIEVAQILNEQVDDFSEIQW

Query:  LVDEI
        +V+EI
Subjt:  LVDEI

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-1237.5Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------DSIEVAQILNEQVD
        W PP  ++W LNTDA+W +    GG+GW++R   GEVI A  +++    ++  LE+ A+ EGLR +     RP     C       DS+E   +L+ Q  
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLEN---RPTPFPIC-------DSIEVAQILNEQVD

Query:  DFSEIQWLVDEI
        D +EI WL++EI
Subjt:  DFSEIQWLVDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0635.38Show/hide
Query:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW
        W  PP      NTDA+W   +   G+GW++R+ +G V++ G + +    +V    +EA LE LRW
Subjt:  WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW

AT4G29090.1 Ribonuclease H-like superfamily protein2.3e-0842.42Show/hide
Query:  WVPPPLHTWT-LNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW
        W PPP H W   NTDA+W+  ++  G+GWV+R+  GEV + G + +    SV    +EA LE +RW
Subjt:  WVPPPLHTWT-LNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTACCACCCCCATTACATACCTGGACTCTAAATACCGACGCCTCTTGGTCTTCTTCTCACCAATTGGGCGGGTTAGGATGGGTGGTGCGAAGCTGGACGGGAGAGGT
CATCTACGCCGGAAATAAGGTGGTCGATAACTGCTGGAGCGTGAAAATGCTAGAGATGGAAGCAGTGCTGGAGGGGCTTCGTTGGCTGGAAAATCGACCGACGCCGTTCC
CGATCTGTGATTCAATTGAGGTGGCCCAGATTTTGAATGAGCAAGTCGACGATTTTTCCGAAATCCAATGGTTGGTTGACGAAATC
mRNA sequenceShow/hide mRNA sequence
TGGGTACCACCCCCATTACATACCTGGACTCTAAATACCGACGCCTCTTGGTCTTCTTCTCACCAATTGGGCGGGTTAGGATGGGTGGTGCGAAGCTGGACGGGAGAGGT
CATCTACGCCGGAAATAAGGTGGTCGATAACTGCTGGAGCGTGAAAATGCTAGAGATGGAAGCAGTGCTGGAGGGGCTTCGTTGGCTGGAAAATCGACCGACGCCGTTCC
CGATCTGTGATTCAATTGAGGTGGCCCAGATTTTGAATGAGCAAGTCGACGATTTTTCCGAAATCCAATGGTTGGTTGACGAAATC
Protein sequenceShow/hide protein sequence
WVPPPLHTWTLNTDASWSSSHQLGGLGWVVRSWTGEVIYAGNKVVDNCWSVKMLEMEAVLEGLRWLENRPTPFPICDSIEVAQILNEQVDDFSEIQWLVDEI