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MS022551 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022551
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold88:11680..12124
RNA-Seq ExpressionMS022551
SyntenyMS022551
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]2.8e-0932.89Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW  + +G ++  S  S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCN +   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

VVA20721.1 Hypothetical predicted protein, partial [Prunus dulcis]3.9e-1137.68Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVW
        +R CP++ +S  W  LCNK+   +    L C FSLK+W
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVW

VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]2.1e-0933.55Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW  + +G ++  SL S   +Q  G  E    Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCN +   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

VVA33204.1 PREDICTED: ribonuclease H [Prunus dulcis]3.3e-1034.21Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D   W L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCNK+   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]6.6e-1134.87Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCNK+   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

TrEMBL top hitse value%identityAlignment
A0A4Y1R3V4 VIRB2-interacting protein 21.3e-0932.89Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW  + +G ++  S  S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCN +   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

A0A5E4F237 zf-RVT domain-containing protein (Fragment)1.9e-1137.68Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVW
        +R CP++ +S  W  LCNK+   +    L C FSLK+W
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVW

A0A5E4FED8 Reverse transcriptase domain-containing protein (Fragment)1.0e-0933.55Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW  + +G ++  SL S   +Q  G  E    Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCN +   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

A0A5E4G0J2 PREDICTED: ribonuclease H1.6e-1034.21Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D   W L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCNK+   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

A0A5E4GJ11 Reverse transcriptase domain-containing protein (Fragment)3.2e-1134.87Show/hide
Query:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL
        W   F RNL + +I E A L  L+   +L + R D  IW L+ +G ++  SL S   +Q  G  E+   Y  IWK   P KVK  + +     LNT D L
Subjt:  WKMNFCRNLKDEDIREWATLFSLISSFQL-SERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTEL---YKIIWKNSCPKKVKFLILKLSHSCLNTHDPL

Query:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP
        +R CP++ +S  W  LCNK+   +    L C FSLK+W       + + + P
Subjt:  RRICPWMVLS-SWSPLCNKSQTHI--FFLACLFSLKVWRHFFSAFSWLIIFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAAGATGAACTTTTGCAGGAACCTCAAAGATGAAGATATTAGGGAATGGGCAACATTATTCTCATTAATCTCTTCATTCCAGCTCTCGGAAAGAGCAGATATATGGAT
ATGGAACCTTGAAAGAAATGGAAAATATTCTTATCAATCTTTGACTTCAAAAACCTTGTTGCAGGTGTGGGGAACAACAGAGCTCTACAAAATTATCTGGAAGAATTCAT
GCCCAAAAAAGGTTAAGTTCTTGATTTTGAAACTTAGTCATTCTTGTCTCAACACACATGATCCCCTTCGAAGAATATGCCCCTGGATGGTTTTATCTAGCTGGTCTCCT
CTTTGCAACAAATCTCAAACACACATCTTCTTCCTTGCGTGCCTCTTTTCATTAAAGGTATGGAGGCACTTTTTCTCTGCCTTTAGCTGGTTGATAATTTTTCCA
mRNA sequenceShow/hide mRNA sequence
TGGAAGATGAACTTTTGCAGGAACCTCAAAGATGAAGATATTAGGGAATGGGCAACATTATTCTCATTAATCTCTTCATTCCAGCTCTCGGAAAGAGCAGATATATGGAT
ATGGAACCTTGAAAGAAATGGAAAATATTCTTATCAATCTTTGACTTCAAAAACCTTGTTGCAGGTGTGGGGAACAACAGAGCTCTACAAAATTATCTGGAAGAATTCAT
GCCCAAAAAAGGTTAAGTTCTTGATTTTGAAACTTAGTCATTCTTGTCTCAACACACATGATCCCCTTCGAAGAATATGCCCCTGGATGGTTTTATCTAGCTGGTCTCCT
CTTTGCAACAAATCTCAAACACACATCTTCTTCCTTGCGTGCCTCTTTTCATTAAAGGTATGGAGGCACTTTTTCTCTGCCTTTAGCTGGTTGATAATTTTTCCA
Protein sequenceShow/hide protein sequence
WKMNFCRNLKDEDIREWATLFSLISSFQLSERADIWIWNLERNGKYSYQSLTSKTLLQVWGTTELYKIIWKNSCPKKVKFLILKLSHSCLNTHDPLRRICPWMVLSSWSP
LCNKSQTHIFFLACLFSLKVWRHFFSAFSWLIIFP