; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022554 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022554
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionrho GTPase-activating protein gacH
Genome locationscaffold88:87630..88575
RNA-Seq ExpressionMS022554
SyntenyMS022554
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036020 - WW domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597689.1 hypothetical protein SDJN03_10869, partial [Cucurbita argyrosperma subsp. sororia]9.5e-5666.51Show/hide
Query:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG
        +VMS  PNMATITAALERSLQNCSLS HRR        H H      NS+SS          +   TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNG
Subjt:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG

Query:  MKAKEDPRSTTEDQYSEDYDDDYS-DDDDSSYDSEESSTELSSVTRESN------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL
        MKAKEDPRS TED YSEDY   YS DDDD   DS ESSTE S+   E+N       +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLL
Subjt:  MKAKEDPRSTTEDQYSEDYDDDYS-DDDDSSYDSEESSTELSSVTRESN------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL

Query:  HFDRSENDI
        HFDRSEN+I
Subjt:  HFDRSENDI

KAG7029133.1 hypothetical protein SDJN02_10318 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-5666.99Show/hide
Query:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG
        +VMST PNMATITAALERSLQNCSLS HRR        H H      NS+SS          +   TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNG
Subjt:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG

Query:  MKAKEDPRSTTEDQYSEDYDDDYS-DDDDSSYDSEESSTELSSVTRESN------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL
        MKAKEDPRS TED YSEDY   YS DDDD   DS+ESSTE S+   E+N       +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLL
Subjt:  MKAKEDPRSTTEDQYSEDYDDDYS-DDDDSSYDSEESSTELSSVTRESN------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL

Query:  HFDRSENDI
        HFDRSEN+I
Subjt:  HFDRSENDI

XP_022932700.1 rho GTPase-activating protein gacH [Cucurbita moschata]1.9e-5665.53Show/hide
Query:  VVMSTGPNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM
        +VMST PNMATITAALERSLQNCSLS RR        H H      NS+SS          +   TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNGM
Subjt:  VVMSTGPNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM

Query:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHFD
        KAKEDPR  TED YSEDY   Y  DDD   DS+ESSTE S+   E+       +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLLHFD
Subjt:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHFD

Query:  RSENDI
        RSEN+I
Subjt:  RSENDI

XP_023540596.1 histone chaperone RTT106-like isoform X1 [Cucurbita pepo subsp. pepo]5.6e-5667.15Show/hide
Query:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG
        +VMST PNMATITAALERSLQNCSLS HRR        H H      NS+SS          +   TTLDLNSH SLP HWEQCLDLKTGEIYYINWRNG
Subjt:  VVMSTGPNMATITAALERSLQNCSLS-HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNG

Query:  MKAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHF
        MKAKEDPRS TED YSEDY   YSDDDD   DS+ESSTE S+   E+N      +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLLHF
Subjt:  MKAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHF

Query:  DRSENDI
        DRSEN+I
Subjt:  DRSENDI

XP_038880672.1 uncharacterized protein LOC120072288 [Benincasa hispida]1.2e-5568.56Show/hide
Query:  NMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR
        NM TIT ALE SL+ CSLSH        Q+H H     ++S+SSSN+     I+  + TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR
Subjt:  NMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR

Query:  STTE-DQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDRSENDI
        ST E D+YSEDY   YSDDDDSSYDSEESSTE S+    +NN K   ++E+E DVLVV GCK C MYFMVPK+LEDCPKC GQLLHFDRSENDI
Subjt:  STTE-DQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDRSENDI

TrEMBL top hitse value%identityAlignment
A0A6J1F2V9 rho GTPase-activating protein gacH9.3e-5765.53Show/hide
Query:  VVMSTGPNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM
        +VMST PNMATITAALERSLQNCSLS RR        H H      NS+SS          +   TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNGM
Subjt:  VVMSTGPNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM

Query:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHFD
        KAKEDPR  TED YSEDY   Y  DDD   DS+ESSTE S+   E+       +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLLHFD
Subjt:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNN-----DKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLLHFD

Query:  RSENDI
        RSEN+I
Subjt:  RSENDI

A0A6J1GTR7 uncharacterized protein LOC111457490 isoform X23.6e-5362.68Show/hide
Query:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR
        MS  P MAT+TAALERSL+NCSLSHR+       DSH  S +H                           L LNSH SLPYHWEQCLDLKTGEIYYINWR
Subjt:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR

Query:  NGMKAKEDPRSTTE-DQYSEDY----DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC-TGQLL
        NGMKAKEDPR TTE DQYS+DY    DDD  DDDDSSYDSEESST  S+    + N  K  ++++E DVLVVAGCK CLMYFMVPKHLE+CPKC +G+LL
Subjt:  NGMKAKEDPRSTTE-DQYSEDY----DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC-TGQLL

Query:  HFDRSENDI
        HFDRSENDI
Subjt:  HFDRSENDI

A0A6J1GTV5 protein Tube-like isoform X13.6e-5360.09Show/hide
Query:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR
        MS  P MAT+TAALERSL+NCSLSHR+       DSH  S +H                           L LNSH SLPYHWEQCLDLKTGEIYYINWR
Subjt:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR

Query:  NGMKAKEDPRSTTE-DQYSEDY-------------DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDC
        NGMKAKEDPR TTE DQYS+DY             DDD  DDDDSSYDSEESST  S+    + N  K  ++++E DVLVVAGCK CLMYFMVPKHLE+C
Subjt:  NGMKAKEDPRSTTE-DQYSEDY-------------DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDC

Query:  PKC-TGQLLHFDRSENDI
        PKC +G+LLHFDRSENDI
Subjt:  PKC-TGQLLHFDRSENDI

A0A6J1I5N3 uncharacterized protein LOC1114708945.1e-5565.55Show/hide
Query:  MSTGPNMATITAALERSLQNCSLS--HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM
        MST PNMATITAALERSLQNCSLS   RR    H Q   H+       NSSS+        +   TTLDLNSH SLPYHWEQCLDLKTGEIYYINWRNGM
Subjt:  MSTGPNMATITAALERSLQNCSLS--HRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGM

Query:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN--------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL
        KAKEDPRS TED YSEDY   Y DDDD   DS+ESSTE S+   ++N         +++EE++E+E DVLVVAGCKSCLMYFMVPK +EDCPKC+ GQLL
Subjt:  KAKEDPRSTTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN--------NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCT-GQLL

Query:  HFDRSENDI
        HFDRSEN+I
Subjt:  HFDRSENDI

A0A6J1IQL3 methionine aminopeptidase 2-like2.1e-5361.79Show/hide
Query:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR
        MS  P MAT+TAALERSLQNCSLSHR+       DSH  S +H                           L LNSH SLPYHWEQCLDLKTGEIYYINWR
Subjt:  MSTGPNMATITAALERSLQNCSLSHRRY-----GDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWR

Query:  NGMKAKEDPRSTTE-DQYSEDY-------DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC-TG
        NGMKAKEDPR TTE DQYS+DY       DD+  DDDDSSYDSEESSTE S+    + N  K  ++++E DVLVVAGCK CLMYFMVPKHLE+CPKC +G
Subjt:  NGMKAKEDPRSTTE-DQYSEDY-------DDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC-TG

Query:  QLLHFDRSENDI
        +LL+FDRSENDI
Subjt:  QLLHFDRSENDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28070.1 unknown protein3.5e-3247.45Show/hide
Query:  MATITAALERSLQNCSLSHRR--YGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDP
        MA IT  LERS+QNCSL  RR   GD    S  H                   I + S   L+L+SH S+P H EQCLDLKTGEIYY +W +GM+ KEDP
Subjt:  MATITAALERSLQNCSLSHRR--YGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDP

Query:  R-STTEDQYSEDYDDD------YSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDR
        R S +   Y++    +       S++  S Y+SEESS+E       S + +K  K+E++ DVLVVAGCK+CLMYFMVPK  +DCPKC  QLLHFD+
Subjt:  R-STTEDQYSEDYDDD------YSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDR

AT2G33510.1 CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202)3.6e-4554.64Show/hide
Query:  PNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDP
        PNM TIT +LE+S+ NCSL+ RR              G     SSSN    E +   S  TL+LNSH SLP HWEQCLDLKTGEIYYINW+NGM+ KEDP
Subjt:  PNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDP

Query:  RS--TTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN---NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDR
        R     +    + Y    S++D S YDSEESS+E S  +RE++    +++EE++E+E DVLVVAGCK+C MYFMVPK +EDCPKC  QLLHFDR
Subjt:  RS--TTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN---NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDR

AT2G33510.2 unknown protein3.7e-4250.72Show/hide
Query:  PNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLK---------------TGEI
        PNM TIT +LE+S+ NCSL+ RR              G     SSSN    E +   S  TL+LNSH SLP HWEQCLDLK               TGEI
Subjt:  PNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLK---------------TGEI

Query:  YYINWRNGMKAKEDPRS--TTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN---NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC
        YYINW+NGM+ KEDPR     +    + Y    S++D S YDSEESS+E S  +RE++    +++EE++E+E DVLVVAGCK+C MYFMVPK +EDCPKC
Subjt:  YYINWRNGMKAKEDPRS--TTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESN---NDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKC

Query:  TGQLLHFDR
          QLLHFDR
Subjt:  TGQLLHFDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAGAATTGTAGTAATGAGTACAGGTCCAAATATGGCCACCATTACTGCTGCTTTAGAGCGGTCTCTCCAAAACTGTTCTTTAAGCCATCGCCGTTACGGAGATTCTCA
TTCTCAATCCCATTCTCATTCCTGTGGCGGCACTGCAAATTCAAATTCTTCTTCCAATTCCAATGAAGTTGAAGAAATTAATGTTCACTCTCAAACTACTTTGGATCTCA
ACTCCCACACCTCCCTCCCTTACCATTGGGAGCAATGCCTCGATTTAAAGACAGGGGAGATATACTACATAAACTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGG
TCAACAACAGAAGATCAATACAGTGAAGACTACGACGACGACTATTCGGACGACGACGACAGCTCGTATGACAGCGAGGAGTCGTCGACGGAGTTGTCGTCGGTGACGAG
GGAGTCAAACAACGACAAGAAGGAAGAGAAAAAAGAGAAAGAAGGTGATGTTTTGGTAGTTGCAGGATGCAAGAGCTGCCTCATGTATTTTATGGTGCCAAAACATCTTG
AAGATTGCCCTAAATGCACTGGTCAGCTTCTCCATTTTGATCGCTCTGAAAATGACATTATTCCA
mRNA sequenceShow/hide mRNA sequence
TTTAGAATTGTAGTAATGAGTACAGGTCCAAATATGGCCACCATTACTGCTGCTTTAGAGCGGTCTCTCCAAAACTGTTCTTTAAGCCATCGCCGTTACGGAGATTCTCA
TTCTCAATCCCATTCTCATTCCTGTGGCGGCACTGCAAATTCAAATTCTTCTTCCAATTCCAATGAAGTTGAAGAAATTAATGTTCACTCTCAAACTACTTTGGATCTCA
ACTCCCACACCTCCCTCCCTTACCATTGGGAGCAATGCCTCGATTTAAAGACAGGGGAGATATACTACATAAACTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGG
TCAACAACAGAAGATCAATACAGTGAAGACTACGACGACGACTATTCGGACGACGACGACAGCTCGTATGACAGCGAGGAGTCGTCGACGGAGTTGTCGTCGGTGACGAG
GGAGTCAAACAACGACAAGAAGGAAGAGAAAAAAGAGAAAGAAGGTGATGTTTTGGTAGTTGCAGGATGCAAGAGCTGCCTCATGTATTTTATGGTGCCAAAACATCTTG
AAGATTGCCCTAAATGCACTGGTCAGCTTCTCCATTTTGATCGCTCTGAAAATGACATTATTCCA
Protein sequenceShow/hide protein sequence
FRIVVMSTGPNMATITAALERSLQNCSLSHRRYGDSHSQSHSHSCGGTANSNSSSNSNEVEEINVHSQTTLDLNSHTSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR
STTEDQYSEDYDDDYSDDDDSSYDSEESSTELSSVTRESNNDKKEEKKEKEGDVLVVAGCKSCLMYFMVPKHLEDCPKCTGQLLHFDRSENDIIP