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MS022557 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022557
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold88:169652..169819
RNA-Seq ExpressionMS022557
SyntenyMS022557
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PPD84527.1 hypothetical protein GOBAR_DD18536 [Gossypium barbadense]5.7e-1150Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        G F R+RVK+++ + LRRG  + +G G K W P +YEKLP FCF CG++GH   +C
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
XP_012492109.1 PREDICTED: uncharacterized protein LOC105804163 [Gossypium raimondii]3.3e-1151.79Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        G F R+R+K+++ K LRRG  + +G G +VW P +YEKLP FCF CG +GH  +EC
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
XP_016684451.1 uncharacterized protein LOC107902849 [Gossypium hirsutum]5.7e-1150Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        G F R+RVK+++ + LRRG  + +G G K W P +YEKLP FCF CG++GH   +C
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.3e-1564.29Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        GPFIR+RVK+D+SK LRRG  +K   G  +WCP++YEKLPDFC+ CG IGH  REC
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]4.3e-1151.85Show/hide
Query:  PFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKRE
        PF+ +RVK+++ K LRRG  +K   G  +WCP++YE+LPDFC+ CG +GH  RE
Subjt:  PFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKRE
TrEMBL top hitse value%identityAlignment
A0A1U8J279 uncharacterized protein LOC1079028492.7e-1150Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        G F R+RVK+++ + LRRG  + +G G K W P +YEKLP FCF CG++GH   +C
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
A0A2N9F8I2 CCHC-type domain-containing protein3.6e-1155.56Show/hide
Query:  FIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        FIRIRV++DISK L+  F +   G   +W  ++YEKLPDFC++CG+IGHL+R+C
Subjt:  FIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
A0A6J1D765 uncharacterized protein LOC1110179026.3e-1664.29Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        GPFIR+RVK+D+SK LRRG  +K   G  +WCP++YEKLPDFC+ CG IGH  REC
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
A0A6J1DVS4 uncharacterized protein LOC1110235552.1e-1151.85Show/hide
Query:  PFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKRE
        PF+ +RVK+++ K LRRG  +K   G  +WCP++YE+LPDFC+ CG +GH  RE
Subjt:  PFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKRE
A0A7N2MNG6 CCHC-type domain-containing protein1.6e-1157.14Show/hide
Query:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
        GPF+RIRV +DI+K L RG MI++ G  K W   +YE+LP +C+RCG++GH KREC
Subjt:  GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGCCTTTTATTCGGATTCGTGTTAAGATGGATATTTCGAAATCTCTTCGTCGCGGTTTCATGATCAAATTGGGTGGAGGCTTGAAGGTGTGGTGTCCGGTTCAATACGA
AAAATTACCTGATTTCTGTTTTCGGTGTGGTGTAATCGGGCATTTGAAGCGGGAGTGT
mRNA sequenceShow/hide mRNA sequence
GGGCCTTTTATTCGGATTCGTGTTAAGATGGATATTTCGAAATCTCTTCGTCGCGGTTTCATGATCAAATTGGGTGGAGGCTTGAAGGTGTGGTGTCCGGTTCAATACGA
AAAATTACCTGATTTCTGTTTTCGGTGTGGTGTAATCGGGCATTTGAAGCGGGAGTGT
Protein sequenceShow/hide protein sequence
GPFIRIRVKMDISKSLRRGFMIKLGGGLKVWCPVQYEKLPDFCFRCGVIGHLKREC