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MS022559 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022559
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
Genome locationscaffold88:199648..199749
RNA-Seq ExpressionMS022559
SyntenyMS022559
Gene Ontology termsGO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
GO:0043175 - RNA polymerase core enzyme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145788.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia]6.5e-10100Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
XP_022955996.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X2 [Cucurbita moschata]2.5e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYE +KDHILPLGR  QF  +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
XP_022980005.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X2 [Cucurbita maxima]2.5e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRS+EYE +KDHILPLGR  QFS +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
XP_031739958.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Cucumis sativus]1.5e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYE+M+DHILPLGR  Q S +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
XP_038893419.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Benincasa hispida]4.6e-0888.24Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYEVMKDHILPLGR+ QFS +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
TrEMBL top hitse value%identityAlignment
A0A0A0KVU3 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog7.2e-0779.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYE+M+DHILPLGR  Q S +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
A0A6J1CWB1 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog3.1e-10100Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
A0A6J1GWL9 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog1.2e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRSDEYE +KDHILPLGR  QF  +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
A0A6J1IUY3 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog1.2e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRS+EYE +KDHILPLGR  QFS +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
A0A6J1IY57 RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog1.2e-0679.41Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        VLDRAQIRS+EYE +KDHILPLGR  QFS +NDA
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
SwissProt top hitse value%identityAlignment
F4K1B1 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog4.2e-0452.94Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        +L+ + I ++EYE MKD +LPLGRVPQF++++ A
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
Arabidopsis top hitse value%identityAlignment
AT5G26760.1 unknown protein3.0e-0552.94Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        +L+ + I ++EYE MKD +LPLGRVPQF++++ A
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
AT5G26760.2 unknown protein3.0e-0552.94Show/hide
Query:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA
        +L+ + I ++EYE MKD +LPLGRVPQF++++ A
Subjt:  VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGCTTGATCGTGCTCAGATACGGTCCGATGAGTACGAGGTTATGAAAGATCATATCTTACCGCTTGGTCGAGTACCTCAATTTTCATCACAGAACGATGCC
mRNA sequenceShow/hide mRNA sequence
GTGCTTGATCGTGCTCAGATACGGTCCGATGAGTACGAGGTTATGAAAGATCATATCTTACCGCTTGGTCGAGTACCTCAATTTTCATCACAGAACGATGCC
Protein sequenceShow/hide protein sequence
VLDRAQIRSDEYEVMKDHILPLGRVPQFSSQNDA