; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022687 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022687
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold1334:124906..125519
RNA-Seq ExpressionMS022687
SyntenyMS022687
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]1.2e-2136.63Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K
        D   WS+ES G FS KS S+ L+    + K+L SAI +SG P ++++L WI +F  + +     +K      P SIC L    ++   H+   CP ++  
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K

Query:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW
        W R+F LFNL W F +S S ++ QL+ G   LP   R++W    KALL E    RNQR+F +K R   E    A   A+ W S++ +F +YS   I ++W
Subjt:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW

Query:  DA
        +A
Subjt:  DA

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]2.1e-2337.25Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K
        D   WS+ES G FS KS S+ L+    + K+L SAI +SG P ++++L WI +F  +N+     +K      P SIC L    ++   H+   CP ++  
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K

Query:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW
        W R+F LFNL W F +S S ++ QL+ G   LP   R++W    KALL E    RNQR+F +K R   E    A   A+ W S++ +F +YS   I ++W
Subjt:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW

Query:  DAFL
        + FL
Subjt:  DAFL

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]4.3e-2441.24Show/hide
Query:  LQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK-WR-VFYLFNLCWGFPNSASGNLKQLVY
        + K+  +A+WK+  P +V+V  WI   G LNT     +K    A   S C L + + E   HL F C FA+K W  +F+ FN+ W F   A  N+ QL++
Subjt:  LQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK-WR-VFYLFNLCWGFPNSASGNLKQLVY

Query:  GPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISWDAFL
        GP  L    R LW N VKALLSE    RN RLF+ K+R + E F  AK+KASLW S+   F  +S   I+ +W AF+
Subjt:  GPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISWDAFL

XP_028960603.1 uncharacterized protein LOC114825746 [Malus domestica]5.8e-1330.54Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKSGC-PKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK
        D  +W +E+SGLF+ KS+ SFL     +Q  Q HS IWKS   PKV +L W+   G LNT      +  F+      C L     E   H+   C +  +
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKSGC-PKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK

Query:  --WRVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFE-CFDLAKYKASLWYSMQPQFKDYSSDSIFI
          W++F      W  P      L    +       KA+ LW   V A+       RN+R+F++      E  +   KY A+LW S+   F +YS   +  
Subjt:  --WRVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFE-CFDLAKYKASLWYSMQPQFKDYSSDSIFI

Query:  SWD
         WD
Subjt:  SWD

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]8.9e-2233.66Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAKW
        D+  WS+ ++  ++VKS  + L P   L+K + S IWK+  P +V++L WI LFG LN      +K    +   ++C     ++E   HL F CP+++ W
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAKW

Query:  ---RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFIS
           ++   FNL     N    N+ QL+  P       RLLW NAVKALL++    RNQR+F NK     +  + A+ +AS W  +   F+ YS     ++
Subjt:  ---RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFIS

Query:  WDAFL
        W+AF+
Subjt:  WDAFL

TrEMBL top hitse value%identityAlignment
A0A251RJG1 zf-RVT domain-containing protein1.4e-1231.5Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKS-GCPKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK
        D  +W LE SG F+ KSF SFL  + + +     S +WK+   PKV V  W+   G +NT      K  F+      CVL     E   HL   CPF+  
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKS-GCPKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK

Query:  --WRVFYLFNLCWGFPNSASGNLKQ--LVYGPFLLPPKARLLW---TNAVKALLSEFRNQRLFKNKKR-DWFECFDLAKYKASLWYSMQPQFKDYSSDSI
          W ++      W  P   S  L    +V+G   L      LW    ++V  ++   RN+R+F++ K     + +D  KY A+ W S+   FKDYS  +I
Subjt:  --WRVFYLFNLCWGFPNSASGNLKQ--LVYGPFLLPPKARLLW---TNAVKALLSEFRNQRLFKNKKR-DWFECFDLAKYKASLWYSMQPQFKDYSSDSI

A0A540MEX9 zf-RVT domain-containing protein8.1e-1330.54Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKSGC-PKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK
        D  +W LE+SGLF+ KS+ SFL     +Q    +S IWKS   PKV +L W+   G LNT      +  F+      C L   N E   H+   C +  +
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQK-QLHSAIWKSGC-PKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK

Query:  --WRVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFE-CFDLAKYKASLWYSMQPQFKDYSSDSIFI
          W++F      W  P      L    +    +  KA+ LW   V A+       RN+R+F++      E  +   KY A+LW S+   F +YS   +  
Subjt:  --WRVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFE-CFDLAKYKASLWYSMQPQFKDYSSDSIFI

Query:  SWD
         WD
Subjt:  SWD

A0A5A7T2Y0 zf-RVT domain-containing protein5.6e-2236.63Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K
        D   WS+ES G FS KS S+ L+    + K+L SAI +SG P ++++L WI +F  + +     +K      P SIC L    ++   H+   CP ++  
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K

Query:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW
        W R+F LFNL W F +S S ++ QL+ G   LP   R++W    KALL E    RNQR+F +K R   E    A   A+ W S++ +F +YS   I ++W
Subjt:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW

Query:  DA
        +A
Subjt:  DA

A0A5D3DE60 zf-RVT domain-containing protein1.0e-2337.25Show/hide
Query:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K
        D   WS+ES G FS KS S+ L+    + K+L SAI +SG P ++++L WI +F  +N+     +K      P SIC L    ++   H+   CP ++  
Subjt:  DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAA-K

Query:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW
        W R+F LFNL W F +S S ++ QL+ G   LP   R++W    KALL E    RNQR+F +K R   E    A   A+ W S++ +F +YS   I ++W
Subjt:  W-RVFYLFNLCWGFPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISW

Query:  DAFL
        + FL
Subjt:  DAFL

A0A6J1DIE2 uncharacterized protein LOC1110207652.1e-2441.24Show/hide
Query:  LQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK-WR-VFYLFNLCWGFPNSASGNLKQLVY
        + K+  +A+WK+  P +V+V  WI   G LNT     +K    A   S C L + + E   HL F C FA+K W  +F+ FN+ W F   A  N+ QL++
Subjt:  LQKQLHSAIWKSGCP-KVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAK-WR-VFYLFNLCWGFPNSASGNLKQLVY

Query:  GPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISWDAFL
        GP  L    R LW N VKALLSE    RN RLF+ K+R + E F  AK+KASLW S+   F  +S   I+ +W AF+
Subjt:  GPFLLPPKARLLWTNAVKALLSEF---RNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISWDAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACGAGCTAAAATGGAGCCTTGAATCCTCAGGCTTATTCTCAGTCAAATCCTTCTCAAGTTTTCTGGAGCCTGAACACAAGCTACAAAAACAGCTTCATTCTGCAATATG
GAAATCAGGTTGTCCGAAGGTCAGTGTCCTCTCGTGGATAACCCTCTTTGGCAACCTGAATACTATGGGATATACTTCAGAAAAAGTTGCCTTCCTCGCTCCTCCAGCCT
CAATCTGTGTTCTTAGTTCAACAAACAACGAATACCAAGCTCATTTACTCTTTCTTTGTCCCTTTGCGGCCAAGTGGAGAGTATTTTACCTCTTCAATTTATGCTGGGGT
TTTCCAAACTCAGCGTCAGGGAACTTGAAGCAGCTTGTTTATGGACCATTTCTTCTTCCCCCAAAAGCTCGCCTTCTTTGGACCAATGCAGTTAAAGCATTGCTCTCTGA
ATTTAGAAACCAACGGCTCTTCAAAAACAAGAAAAGGGATTGGTTTGAATGTTTTGATCTAGCTAAGTACAAGGCATCTCTTTGGTACTCGATGCAACCTCAATTTAAAG
ATTATTCCTCTGATTCTATTTTTATATCTTGGGATGCTTTCCTTTTGCGTTCATTTGTA
mRNA sequenceShow/hide mRNA sequence
GACGAGCTAAAATGGAGCCTTGAATCCTCAGGCTTATTCTCAGTCAAATCCTTCTCAAGTTTTCTGGAGCCTGAACACAAGCTACAAAAACAGCTTCATTCTGCAATATG
GAAATCAGGTTGTCCGAAGGTCAGTGTCCTCTCGTGGATAACCCTCTTTGGCAACCTGAATACTATGGGATATACTTCAGAAAAAGTTGCCTTCCTCGCTCCTCCAGCCT
CAATCTGTGTTCTTAGTTCAACAAACAACGAATACCAAGCTCATTTACTCTTTCTTTGTCCCTTTGCGGCCAAGTGGAGAGTATTTTACCTCTTCAATTTATGCTGGGGT
TTTCCAAACTCAGCGTCAGGGAACTTGAAGCAGCTTGTTTATGGACCATTTCTTCTTCCCCCAAAAGCTCGCCTTCTTTGGACCAATGCAGTTAAAGCATTGCTCTCTGA
ATTTAGAAACCAACGGCTCTTCAAAAACAAGAAAAGGGATTGGTTTGAATGTTTTGATCTAGCTAAGTACAAGGCATCTCTTTGGTACTCGATGCAACCTCAATTTAAAG
ATTATTCCTCTGATTCTATTTTTATATCTTGGGATGCTTTCCTTTTGCGTTCATTTGTA
Protein sequenceShow/hide protein sequence
DELKWSLESSGLFSVKSFSSFLEPEHKLQKQLHSAIWKSGCPKVSVLSWITLFGNLNTMGYTSEKVAFLAPPASICVLSSTNNEYQAHLLFLCPFAAKWRVFYLFNLCWG
FPNSASGNLKQLVYGPFLLPPKARLLWTNAVKALLSEFRNQRLFKNKKRDWFECFDLAKYKASLWYSMQPQFKDYSSDSIFISWDAFLLRSFV