CuGenDBv2

Gene ID	MS022691
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNase H domain-containing protein
Genome location	scaffold41:26748..27161
RNA-Seq Expression	MS022691
Synteny	MS022691
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]

1.1e-15

44.68

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDL
        W  PP + W LN DA WS   + GG+GW+L +  G I+LAGN  + +   I ALE M ++ GL+ IN     PI +ESDS +V+ L++ ED DL
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

6.2e-19

38.69

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV
        W PP  ++W LN +A W A   TGG+GW+L++ +G +I A  + +    +I  LE M + EGLRAI      PI +ESDS + + LL  +  D  EI W+
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV

Query:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES
        + EI        +     + R AN  AH LARRA+E+
Subjt:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

3.9e-29

48.89

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYL-VTFPIRVESDSAKVVSLLRGEDTDLKEIFW
        W PPP+H W LN DA WS     GG+GW++++W+G I+LAGN+ V+  +++K LEA  +LEGLR +  L V  P+ +E+DSA+V SLL  +  DL +  W
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYL-VTFPIRVESDSAKVVSLLRGEDTDLKEIFW

Query:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRA
        VV EI   +DSC +  F KV R  N CAH LA+RA
Subjt:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

6.9e-18

37.24

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIR--------VESDSAKVVSLLRGEDT
        W PP  ++W LN DA W A   TGG+GW+L++ +G +I A  + +    +I  LE M + EGLRAI      PI+        +ESDS + + LL  +  
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIR--------VESDSAKVVSLLRGEDT

Query:  DLKEIFWVVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES
        D  EI W++ EI    +   +     + R AN  AH LARRA+E+
Subjt:  DLKEIFWVVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES

XP_024033146.1 uncharacterized protein LOC112095446 [Citrus clementina]

6.0e-14

35.04

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV
        W PPP+  + +NVDA      Q  GLG V++N +G II+A  KS     ++ A EA  V  GL          + +E+D  +V +L   + +  KEI W 
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV

Query:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES
        +++IH +++         V R  N CAH LA+RAL S
Subjt:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

3.0e-19

38.69

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV
        W PP  ++W LN +A W A   TGG+GW+L++ +G +I A  + +    +I  LE M + EGLRAI      PI +ESDS + + LL  +  D  EI W+
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV

Query:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES
        + EI        +     + R AN  AH LARRA+E+
Subjt:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES

A0A6J1CQG0 uncharacterized protein LOC111013216

5.3e-16

44.68

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDL
        W  PP + W LN DA WS   + GG+GW+L +  G I+LAGN  + +   I ALE M ++ GL+ IN     PI +ESDS +V+ L++ ED DL
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDL

A0A6J1D5W1 uncharacterized protein LOC111017329

9.4e-13

31.82

Show/hide

Query:  PLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWVVNEI
        P + W LN DA W A    GGLGW+++N +  I  AG +++ D   I  LE M +  G+ A+    +  + +ES+S + + L++G   ++ EI W+V +I
Subjt:  PLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWVVNEI

Query:  HYWQDSCGVCDFVKVDRVANYCAHHLARRALE
          + +   +  F  V R  N  A  +A RA +
Subjt:  HYWQDSCGVCDFVKVDRVANYCAHHLARRALE

A0A6J1DNV9 uncharacterized protein LOC111022403

1.9e-29

48.89

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYL-VTFPIRVESDSAKVVSLLRGEDTDLKEIFW
        W PPP+H W LN DA WS     GG+GW++++W+G I+LAGN+ V+  +++K LEA  +LEGLR +  L V  P+ +E+DSA+V SLL  +  DL +  W
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYL-VTFPIRVESDSAKVVSLLRGEDTDLKEIFW

Query:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRA
        VV EI   +DSC +  F KV R  N CAH LA+RA
Subjt:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRA

A0A6J1DSV1 uncharacterized protein LOC111023608

3.3e-18

37.24

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIR--------VESDSAKVVSLLRGEDT
        W PP  ++W LN DA W A   TGG+GW+L++ +G +I A  + +    +I  LE M + EGLRAI      PI+        +ESDS + + LL  +  
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIR--------VESDSAKVVSLLRGEDT

Query:  DLKEIFWVVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES
        D  EI W++ EI    +   +     + R AN  AH LARRA+E+
Subjt:  DLKEIFWVVNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02650.1 Ribonuclease H-like superfamily protein

2.9e-06

28.03

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLL-RGEDTDLKEIFW
        W PPP      N D+ ++        GW ++   G I+L GN  +   +     EA+  L  L+ I       +  ESDS  +V+L+  GED  L  +  
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLL-RGEDTDLKEIFW

Query:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLA
        ++ +I +W      C    V+R  N  A  LA
Subjt:  VVNEIHYWQDSCGVCDFVKVDRVANYCAHHLA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.2e-05

22.06

Show/hide

Query:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV
        W PP       N DA     +   GLGW+L+N +G +I  G        + +  E   ++  ++A        +  E D+  +  ++  + ++   +   
Subjt:  WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWV

Query:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALE
        ++ I  W  S    +F    R  N CA  LA++A++
Subjt:  VNEIHYWQDSCGVCDFVKVDRVANYCAHHLARRALE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TGGATACCTCCTCCCCTTCATACCTGGGCACTGAATGTTGATGCTTTTTGGTCGGCAGTTCATCAGACAGGCGGTCTCGGCTGGGTGCTTCAGAACTGGGAGGGCGCAAT
TATTCTTGCAGGGAACAAATCGGTGGACGACCCTAGTAGCATCAAGGCGTTGGAAGCCATGGTCGTTCTTGAAGGGCTTCGGGCGATTAACTATCTTGTGACTTTTCCAA
TCCGAGTGGAATCTGATTCTGCGAAGGTGGTGTCGCTCTTGAGAGGAGAAGATACCGATTTGAAAGAAATTTTCTGGGTTGTTAATGAAATTCATTATTGGCAAGATTCG
TGTGGGGTTTGTGATTTTGTAAAGGTTGATCGGGTTGCGAACTACTGTGCCCATCACCTTGCGCGTCGTGCTTTAGAGAGTAAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

WIPPPLHTWALNVDAFWSAVHQTGGLGWVLQNWEGAIILAGNKSVDDPSSIKALEAMVVLEGLRAINYLVTFPIRVESDSAKVVSLLRGEDTDLKEIFWVVNEIHYWQDS
CGVCDFVKVDRVANYCAHHLARRALESK

MS022691 (gene) of Bitter gourd (TR) v1 genome