CuGenDBv2

Gene ID	MS022692
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome location	scaffold41:27928..28296
RNA-Seq Expression	MS022692
Synteny	MS022692
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]

8.3e-31

48.78

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QA+P Y +S FKL  ++C D     AR WWGS+ + R I W  W+ LC  K + GM FR    FNQ ++AKQ WRI++HP S +A+ L+ KYF   SF++
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AKLG+ PS+  RSILWGR++ +K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]

4.5e-37

56.91

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIPNY++SCF+    LC + +++YAR WWGS    +KI W SWK LCV K+Q G+ F+ L IFNQ MLAKQSW+I+++P S L + LRGKYF+ G+F+ 
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        A+LG++PS+  RSILWG+ELF K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

5.2e-33

53.66

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIP YT+SCF+L   L  +FH+I AR WWGS+ E++KI W +W  L + K + GM FR L +FN+ +LAKQ WRIL HP S L++ L+G+YF+  SF++
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AK+  +PSY  RSILWGR+L +K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]

4.4e-48

73.98

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIPNYTLSCFKL  ++CN+ H IY R WWGS+ E+RKI WQSWK LC+RKD  GM FR + IFNQ MLAKQSWRILRHP S LAKTLRGKYF+ GSFL+
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AKLG  PSYA RSILWGR+LF+K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

XP_030479388.1 uncharacterized protein LOC115696635 [Cannabis sativa]

3.1e-30

54.17

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIP Y ++CF+L   LC     + AR WWGS   + KI W+SWK LC  K   G+ FR L  FNQ MLAKQ+WRIL++P+S LA+ L  +YF   SFL+
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGREL
        AK G++PS++ RSILWGREL
Subjt:  AKLGNSPSYAGRSILWGREL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CV63 uncharacterized protein LOC111014662

2.2e-37

56.91

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIPNY++SCF+    LC + +++YAR WWGS    +KI W SWK LCV K+Q G+ F+ L IFNQ MLAKQSW+I+++P S L + LRGKYF+ G+F+ 
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        A+LG++PS+  RSILWG+ELF K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

A0A6J1DAR4 uncharacterized protein LOC111018954

2.5e-33

53.66

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIP YT+SCF+L   L  +FH+I AR WWGS+ E++KI W +W  L + K + GM FR L +FN+ +LAKQ WRIL HP S L++ L+G+YF+  SF++
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AK+  +PSY  RSILWGR+L +K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

A0A6J1DRA0 uncharacterized protein LOC111022423

2.1e-48

73.98

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIPNYTLSCFKL  ++CN+ H IY R WWGS+ E+RKI WQSWK LC+RKD  GM FR + IFNQ MLAKQSWRILRHP S LAKTLRGKYF+ GSFL+
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AKLG  PSYA RSILWGR+LF+K
Subjt:  AKLGNSPSYAGRSILWGRELFEK

A0A803NGK5 Uncharacterized protein

3.4e-30

51.22

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIP Y +SCF+L   L ND H + AR WWGS+    KI W  WK LC  KD+ GM F+ L  FNQ +LAKQ W+I+ +P S LA+ L+  Y+   SFL+
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
        AK+G   S+  RSILWGR++ EK
Subjt:  AKLGNSPSYAGRSILWGRELFEK

A0A803PV88 Uncharacterized protein

1.5e-30

51.64

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Query:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        QAIP+YT+SCF+L  + C     + A+ WWGS  +  +I W+SW+ LC  K   G+ FR L   NQ MLAKQ+WR+L +PTS LA  L+ KYF    FLK
Subjt:  QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFE
        AKLG+SPSY   S+LWGR+L +
Subjt:  AKLGNSPSYAGRSILWGRELFE

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

1.1e-25

44.72

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Query:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRK-DQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        A+P Y +SCF+L   LC    +     WW S    RKI W +W+ LC  K D  G+ FR LG FNQ +LAKQS+RI+  P + L++ LR +YF   S ++
Subjt:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRK-DQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
          +G  PSYA RSI+ GREL  +
Subjt:  AKLGNSPSYAGRSILWGRELFEK

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

5.4e-20

33.61

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Query:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLKA
        A+P YT++CF L   +C    ++ A  WW +  E + + W++W  L   K + G+ F+ +  FN  +L KQ WR+L  P S +AK  + +YF     L A
Subjt:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLKA

Query:  KLGNSPSYAGRSILWGRELFEK
         LG+ PS+  +SI   +E+  +
Subjt:  KLGNSPSYAGRSILWGRELFEK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

7.7e-27

44.72

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Query:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRK-DQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK
        A+P Y +SCF+L   LC    +     WW S    RKI W +W+ LC  K D  G+ FR LG FNQ +LAKQS+RI+  P + L++ LR +YF   S ++
Subjt:  AIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRK-DQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLK

Query:  AKLGNSPSYAGRSILWGRELFEK
          +G  PSYA RSI+ GREL  +
Subjt:  AKLGNSPSYAGRSILWGRELFEK

Sequences

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CDS sequence

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CAAGCAATCCCAAATTATACGTTGAGCTGTTTTAAGCTTCATGGAGCCCTGTGTAATGATTTTCATAATATTTACGCCCGCTTATGGTGGGGTTCGACTCCTGAGAATAG
GAAAATCCGTTGGCAAAGTTGGAAATGCCTTTGTGTAAGAAAGGATCAAGAAGGCATGAGATTCAGGCATCTTGGAATTTTCAATCAGGTAATGTTAGCCAAGCAAAGTT
GGAGAATTTTGAGGCATCCTACAAGCCCTTTAGCGAAAACTCTTCGGGGAAAATATTTCAGGATAGGGTCTTTCCTAAAGGCAAAACTAGGGAATTCACCGTCTTATGCG
GGAAGGAGTATCCTTTGGGGGCGTGAGCTTTTTGAGAAA

mRNA sequence

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Protein sequence

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QAIPNYTLSCFKLHGALCNDFHNIYARLWWGSTPENRKIRWQSWKCLCVRKDQEGMRFRHLGIFNQVMLAKQSWRILRHPTSPLAKTLRGKYFRIGSFLKAKLGNSPSYA
GRSILWGRELFEK

MS022692 (gene) of Bitter gourd (TR) v1 genome