; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022694 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022694
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold41:29118..29696
RNA-Seq ExpressionMS022694
SyntenyMS022694
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH80348.1 hypothetical protein [Trifolium medium]7.8e-4449.74Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E  W QRSR  WLK GDRNT++FH KASQR   NSIK + DE+ VW   ++ +  +  +YF  +FS++NPS  +++   EV+ SK+ D H      V+T 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        +E+K+A+N M P KAPGPDG  A F+QKY  IVG+++  + L  LN N     +NKT++VLIPK KN    KDFRPISLCNVI KI+ K +AN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.0e-4348.19Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E YW QRSR DWLK GD+NT++FH KAS RR  N I G+ D++  W    + I      +FQ +F+S+NPS+  +S  L+ +  K+  E N  L + FTP
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        ++I +AL+ M P+KAPGPDG  AAF+QK+ +IVGE +T  CL  LN   +L  LN T+I LIPK++    + +FRPISLCNV+Y+I+ K +AN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

XP_010688579.1 PREDICTED: uncharacterized protein LOC104902491 [Beta vulgaris subsp. vulgaris]1.2e-4450.78Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E YW  R+R + L+ GD+NT++FH KASQR++ N+IKGL DE  VWK+ +D+I  I S YFQ +FSS NP  +DM   LE +   + D  N  L    T 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        ++I+ AL  M P+KAPG DGF A F+QK+  IVG D+ +  LR+ NG++ L+ +N+T +VLIPK    + MKDFRPISLC V+YKI+ KTLAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]1.1e-4550.26Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E YW QR++  WLK GDRNT++FH +AS+RR  N+I G++DE+  W   E+ IA  A +YF +I+SS++PS+++   V E I  K+ +E N+ L + FT 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        +E+  AL  + P+KAPGPDG  A F+QKY  IVG ++T++ L  LN N+ +  LNKT I LIPK  N   M DFRPISLCNV+YK+I K LAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]5.8e-4752.63Show/hide
Query:  WLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTPDEI
        W QRSR  WL  GDRNT++FH KAS RR  N+I G+ DE   W+   + IA +A +YFQ I+SS+ P+   +S VL+ I + + +E N  L + FT +EI
Subjt:  WLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTPDEI

Query:  KKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        + ALN M P+KAPGPDG  A F+QKY  IVG D+  + L  LN NMS+  +NKT I L+PK+KN   M DFRPISLCNV+YK+I K LAN
Subjt:  KKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

TrEMBL top hitse value%identityAlignment
A0A2N9GPZ7 Reverse transcriptase domain-containing protein3.8e-4449.22Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E +W QRSR  W+  GD+NT++FH + ++RR TN I GL D + VW+ ++  IA IA  YFQ IF+S+NPS   ++ VL+ + S + +  N  L   FT 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        DE+  AL  M P+KAPGPDG  A FYQ Y +IVG ++T   L  L+    L  +N T+I LIPK+KN  ++ DFRPISLCNVIYKI+ K LAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

A0A2N9I611 Uncharacterized protein2.2e-4452.33Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E YW QR+R  WLK GDRNT++FH KA+QR+  N +KGL D+E  W +  + +  IA  YF+ IF+STN  ++D S   E I   + D  NQ LT VF  
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        +E+ +A++ M  SKAPGPDGF AAFYQKY   VG  + +  L  LN    L  +N TYIVLIPK KN   M +FRPISLCNVIYKI+ K LAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

A0A392M033 CCHC-type domain-containing protein (Fragment)3.8e-4449.74Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E  W QRSR  WLK GDRNT++FH KASQR   NSIK + DE+ VW   ++ +  +  +YF  +FS++NPS  +++   EV+ SK+ D H      V+T 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        +E+K+A+N M P KAPGPDG  A F+QKY  IVG+++  + L  LN N     +NKT++VLIPK KN    KDFRPISLCNVI KI+ K +AN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

A0A7N2L6Z9 Reverse transcriptase domain-containing protein1.5e-4552.33Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E +W QRS+  WLK GDRNT++FH +AS+RR  N+I G++D+   W    D IA+ A TYF+ I+S++NPS +D   V   I + I +E N  L++ FT 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        +EI  AL  + P+K+PGPDG  A F+QKY +IVG +++N+ L  LN  MSL  +NKT IVLIPK  N   M DFRPISLCNVIYK+I KTLAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

A0A7N2MCK5 Uncharacterized protein7.7e-4550.78Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP
        E YW QRSR +W+K GD+NT++FHLKASQRR  N I+G+ D +  W  + +D+A +A  YF  +FS+   + +D    LE I  K+  +  Q L+  FT 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTP

Query:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN
        DEIK AL  M P+K PGPDG  A FYQK+  IVG+ + +  L FLN    L  +N T+IVLIPK+KN + M DFRPI LCNV+YKII K LAN
Subjt:  DEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.1e-1127.54Show/hide
Query:  QRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQ
        ++R  N I  + +++        +I +    Y++H++++   +  +M   L+  +  ++  E  + L +  T  EI   +N +P  K+PGPDGF A FYQ
Subjt:  QRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQ

Query:  KYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKL-KNAMHMKDFRPISLCNVIYKIILKTLAN
        +Y E +   +  +        +      +  I+LIPK  ++    ++FRPISL N+  KI+ K LAN
Subjt:  KYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKL-KNAMHMKDFRPISLCNVIYKIILKTLAN

P08548 LINE-1 reverse transcriptase homolog2.9e-0927.78Show/hide
Query:  DIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMS
        +I  I + Y++ ++S    +  ++   LE     ++  +  +ML +  +  EI   +  +P  K+PGPDGF + FYQ + E +   + N+        + 
Subjt:  DIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMS

Query:  LAHLNKTYIVLIPKL-KNAMHMKDFRPISLCNVIYKIILKTLAN
             +  I LIPK  K+    +++RPISL N+  KI+ K L N
Subjt:  LAHLNKTYIVLIPKL-KNAMHMKDFRPISLCNVIYKIILKTLAN

P11369 LINE-1 retrotransposable element ORF2 protein1.0e-0930.14Show/hide
Query:  DDIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRF-LNGN
        ++I +   ++++ ++S+   +  +M   L+     K+  +    L    +P EI+  +N +P  K+PGPDGF A FYQ + E +   +  +  +  + G 
Subjt:  DDIASIASTYFQHIFSSTNPSEMDMSPVLEVIS-SKILDEHNQMLTKVFTPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRF-LNGN

Query:  MSLAHLNKTYIVLIPK-LKNAMHMKDFRPISLCNVIYKIILKTLAN
        +  +    T I LIPK  K+   +++FRPISL N+  KI+ K LAN
Subjt:  MSLAHLNKTYIVLIPK-LKNAMHMKDFRPISLCNVIYKIILKTLAN

P14381 Transposon TX1 uncharacterized 149 kDa protein4.8e-1228.34Show/hide
Query:  RSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTPDEIKKA
        RSR   L   DR +R+F+    ++ N   I  LF E+       + I   A +++Q++F S +P   D    L      + +   + L    T DE+ +A
Subjt:  RSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTPDEIKKA

Query:  LNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLR-FLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLA
        L  MP +K+PG DG    F+Q + + +G D   +    F  G + L+   +  + L+PK  +   +K++RP+SL +  YKI+ K ++
Subjt:  LNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLR-FLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLA

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein1.3e-1730.16Show/hide
Query:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNP--SEMDMSPVLEVISSKILDEHNQMLTKVF
        E ++ Q+SR  WL+ GD NTR+FH      +  N IK L  ++ V       +  +   Y+ H+  S +   +   +  + ++   +  D     L+ + 
Subjt:  EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNP--SEMDMSPVLEVISSKILDEHNQMLTKVF

Query:  TPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKII
        +  EI  A+  MP +KAPGPD F A F+ +   +V +        F      L   N T I LIPK+     +  FRP+S C V+YKII
Subjt:  TPDEIKKALNGMPPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGAAGTATTGGCTTCAGAGAAGTAGAGAAGATTGGTTGAAGTGGGGAGATAGGAACACGAGGTGGTTCCACTTAAAAGCAAGTCAGCGACGGAATACTAACAGCATAAA
AGGCCTTTTTGATGAGGAAAGTGTCTGGAAACGAAAGGAAGATGACATCGCTTCGATTGCCTCTACCTACTTTCAACATATTTTTTCTTCTACCAATCCGAGTGAGATGG
ATATGAGCCCCGTTTTGGAAGTAATCTCGTCCAAGATTTTGGATGAACATAATCAAATGTTAACAAAAGTTTTCACTCCGGATGAGATCAAAAAGGCGCTAAATGGCATG
CCTCCCTCCAAAGCTCCTGGTCCGGATGGTTTCCAAGCAGCTTTTTACCAAAAATATTCGGAGATTGTGGGGGAGGACATGACTAATATTTGTCTCAGATTTCTAAATGG
TAACATGAGTTTGGCTCACTTAAATAAGACTTATATCGTTTTGATTCCTAAGCTGAAGAATGCTATGCACATGAAAGACTTCAGACCAATTAGCCTATGCAATGTTATTT
ATAAAATCATTTTGAAAACTTTGGCAAAT
mRNA sequenceShow/hide mRNA sequence
GAGAAGTATTGGCTTCAGAGAAGTAGAGAAGATTGGTTGAAGTGGGGAGATAGGAACACGAGGTGGTTCCACTTAAAAGCAAGTCAGCGACGGAATACTAACAGCATAAA
AGGCCTTTTTGATGAGGAAAGTGTCTGGAAACGAAAGGAAGATGACATCGCTTCGATTGCCTCTACCTACTTTCAACATATTTTTTCTTCTACCAATCCGAGTGAGATGG
ATATGAGCCCCGTTTTGGAAGTAATCTCGTCCAAGATTTTGGATGAACATAATCAAATGTTAACAAAAGTTTTCACTCCGGATGAGATCAAAAAGGCGCTAAATGGCATG
CCTCCCTCCAAAGCTCCTGGTCCGGATGGTTTCCAAGCAGCTTTTTACCAAAAATATTCGGAGATTGTGGGGGAGGACATGACTAATATTTGTCTCAGATTTCTAAATGG
TAACATGAGTTTGGCTCACTTAAATAAGACTTATATCGTTTTGATTCCTAAGCTGAAGAATGCTATGCACATGAAAGACTTCAGACCAATTAGCCTATGCAATGTTATTT
ATAAAATCATTTTGAAAACTTTGGCAAAT
Protein sequenceShow/hide protein sequence
EKYWLQRSREDWLKWGDRNTRWFHLKASQRRNTNSIKGLFDEESVWKRKEDDIASIASTYFQHIFSSTNPSEMDMSPVLEVISSKILDEHNQMLTKVFTPDEIKKALNGM
PPSKAPGPDGFQAAFYQKYSEIVGEDMTNICLRFLNGNMSLAHLNKTYIVLIPKLKNAMHMKDFRPISLCNVIYKIILKTLAN