CuGenDBv2

Gene ID	MS022696
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Vesicle transport protein SEC20
Genome location	scaffold41:114996..123510
RNA-Seq Expression	MS022696
Synteny	MS022696
Gene Ontology terms	GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process) GO:0061025 - membrane fusion (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005484 - SNAP receptor activity (molecular function)
InterPro domains	IPR005606 - Sec20

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7025339.1 Vesicle transport protein SEC20 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-97

93.87

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWNDA+H+TLD+IKAIE Y+KQS ST+ NSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSL+ESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERE+LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSL+TRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

XP_022157044.1 uncharacterized protein LOC111023863 [Momordica charantia]

9.7e-104

99.53

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAE+EYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

XP_022960516.1 uncharacterized protein LOC111461229 [Cucurbita moschata]

4.7e-98

94.34

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWNDA+H+TLD+IKAIE Y+KQS ST+ NSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSL+ESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERE+LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

XP_023513480.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111778073 [Cucurbita pepo subsp. pepo]

4.7e-98

94.34

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWNDA+H+TLD+IKAIE Y+KQS ST+ NSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSL+ESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERE+LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

XP_038875148.1 uncharacterized protein LOC120067685 isoform X2 [Benincasa hispida]

1.0e-97

94.34

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWN A+H TL++IKAIE YEKQSES EKNSLPRLNALAQDGLNLLSSLEF LDLLAPQLLSDSEVEAAQSL++SWKNQS+NLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TE96 Putative vesicle transporter Sec20

1.6e-96

92.92

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEV+RVKNEWN+A+H TL++IKAIE Y+KQSES  KNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSE+EAAQSL+ESWKNQS NLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

A0A6J1DTI9 uncharacterized protein LOC111023863

4.7e-104

99.53

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAE+EYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

A0A6J1H7T9 uncharacterized protein LOC111461229

2.3e-98

94.34

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWNDA+H+TLD+IKAIE Y+KQS ST+ NSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSL+ESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERE+LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

A0A6J1KS49 uncharacterized protein LOC111498164

1.5e-97

93.4

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEVDRVKNEWNDA+H+TLD+IKAIE Y+KQS ST+ NSLPRLNALAQDGLNLLSSLEFKLDLL PQLLSDSEVEAAQSL+ESWKNQSHNLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERE+LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETF+ESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

E5GCN4 Vesicle transport protein SEC20

1.6e-96

92.92

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR
        MDKV+EEV+RVKNEWN+A+H TL++IKAIE Y+KQSES  KNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSE+EAAQSL+ESWKNQS NLRSSLR
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLR

Query:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL
        NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTA+TIETFEESTGVLKKAESEYKGHRSLLTRTRNL
Subjt:  NANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNL

Query:  LSTMQRQDVMDR
        LSTMQRQDVMDR
Subjt:  LSTMQRQDVMDR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24315.1 Sec20 family protein

8.8e-71

68.84

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Query:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSE---STEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRS
        MD+V  EV++ K EW +AY KT+  I +I+ Y K        EK SL RLN LAQDGL+LL+SL+F LDLLAPQL SD +V++ QSL+E+WKNQ H+LR 
Subjt:  MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSE---STEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRS

Query:  SLRNANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRT
        +LR+AN+QAK NMRKAAQEERE LLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ NT+  F+ESTGVLKKAESEYKGHRSLL+RT
Subjt:  SLRNANMQAKANMRKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRT

Query:  RNLLSTMQRQDVMDR
        RNLLSTMQRQDV+DR
Subjt:  RNLLSTMQRQDVMDR

Sequences

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CDS sequence

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ATGGACAAGGTGTCAGAGGAGGTGGATCGGGTGAAAAATGAGTGGAACGATGCTTACCATAAGACTCTTGATCAGATTAAAGCAATTGAAGTATATGAGAAACAAAGTGA
GTCGACGGAGAAGAATTCGCTCCCAAGATTGAATGCCCTCGCACAAGATGGATTGAATTTGCTATCTTCGTTAGAATTCAAGCTTGATCTTCTTGCGCCCCAGTTGCTCT
CTGATTCCGAAGTTGAGGCTGCTCAATCATTGATTGAATCTTGGAAAAATCAATCCCACAATTTGCGATCGAGTCTGAGAAATGCAAATATGCAAGCAAAAGCCAACATG
AGAAAGGCTGCTCAGGAGGAGAGAGAACGCCTTCTAGGCGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAAACTAAGGCTGGAATGACATCTGCTGCAGAAAG
CATCACAGAGAGCCTTCGTCGCACCCGTCAACTTATGGTTCAGGAAGTGGAAAGAACCGCAAACACGATTGAGACTTTCGAGGAATCAACTGGAGTGTTGAAGAAGGCTG
AGAGTGAATACAAGGGGCACCGCTCATTGTTGACTCGGACCAGAAACTTACTTTCCACAATGCAACGGCAGGATGTAATGGACAGG

mRNA sequence

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Protein sequence

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MDKVSEEVDRVKNEWNDAYHKTLDQIKAIEVYEKQSESTEKNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLIESWKNQSHNLRSSLRNANMQAKANM
RKAAQEERERLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTANTIETFEESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDR

MS022696 (gene) of Bitter gourd (TR) v1 genome