CuGenDBv2

Gene ID	MS022704
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribonuclease H-like superfamily protein
Genome location	scaffold41:235875..236970
RNA-Seq Expression	MS022704
Synteny	MS022704
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]

1.7e-71

37.43

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+YSMSCF++ KGL  + N +M RFWW   ++KR IHW KW  LC  K  GG+GFRDLE FN+ LL KQ WR+L  P+S VAR+ +++Y     FLE
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
         E       F+W S+ WG++LL KG+RWR+G   S+ +    W+P+ S  + + P +      V  L      WN  L+ ++F   +   IL IPLA++ 
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA
        G D  +WHY ++G YSVKSG  +   +K+ +    S +++   K W     L++P+KIK F W+   D++P G  L  R      IC +     E  LHA
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA

Query:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
        +WL   +K +W+ + + ++     + S  +L    +   +      F  L W +WN+RN  IF GK
Subjt:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]

1.7e-71

37.43

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+YSMSCF++ KGL  + N +M RFWW   ++KR IHW KW  LC  K  GG+GFRDLE FN+ LL KQ WR+L  P+S VAR+ +++Y     FLE
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
         E       F+W S+ WG++LL KG+RWR+G+  S+ +    W+P+ S  + + P +     LV  L      WN  L+ ++F   +    L IPLA++ 
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA
        G D  +WHY ++G YSVKSG  +   +K+ +    S +++   K W     L++P+KIK F W+   D++P G  L  R      IC       E  LHA
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA

Query:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
        +WL   +K +W+ + + ++     + S  +L    +   +      F  L W +WN+RN  IF GK
Subjt:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

XP_015382226.1 uncharacterized protein LOC107175329, partial [Citrus sinensis]

2.2e-71

38.02

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Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QA+P+Y+MS FKL   +     K + RFWWG   ++R IHW KW  LC  K +GGMGFRD  CFN+ L+ KQGWR++ +P+S +ARVLK+KYF  SSF+E
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
          K      FVW SILWGR ++ KG+RW+IG  N V I + NW+P     +P  P   + + +V+ L++   +W + +    F   DA  I+ I L    
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL
          D  +WHY+K G YSVKSG  +    K       S+     W+     ++P KIK+F W+A K+ +P+  NL RR  VG  IC R     ED +HAL  
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL

Query:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
         + +K +W+               L  ++   + K  ++     ++L W IW  RN  IF  K
Subjt:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

2.9e-71

40.38

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Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP Y+MSCF+L K LI + + +  RFWWG  +E +KIHW  W +L   K +GGMGFRDLE FNK LL KQ WR+L +P+S ++RVLK +YF+  SF+E
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQD-DWNENLISNLFHPTDARNILSIPLATI
          K      ++W SILWGRDLL KG+RWRIG+ +SV I   NW+P+  TL+ +   R      VS+L++ ++  W  +++ + F P +A+ ILSIP+   
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQD-DWNENLISNLFHPTDARNILSIPLATI

Query:  KGKDIPMWHYNKDGNYSVKSGCHVCF---PQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLH
          +D  +W+Y K G YSV+SG  V     P       S SE++   W+    + +P+KIK+F W+   D +P+G NL +RG      C      GEDS+H
Subjt:  KGKDIPMWHYNKDGNYSVKSGCHVCF---PQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLH

Query:  ALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIF
          W+ + ++ LW  + F  L  P  I   S       + L++ +F    +++W +WNQRN   F
Subjt:  ALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIF

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

1.8e-73

38.46

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Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+Y+MS FKL +G      + + +FWWG + +KR IHW KW  L   K +GG+GFR+  CFN+ L+ KQ WRLL  P+S V+RVL+++YFR SSFL 
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
          K      ++W SI+WGR ++ KG+RWRIG+   ++I   NW+P   T RPI+P       +V+ L+   + W+E  +   F   D   IL IPL   K
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL
         +D  +WHY+K GNYSVKSG  +    K     SC+E   K WS    L++P K+K+F W+A  + +PS  NL +R  V    C R     E   HAL  
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL

Query:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGKE
         + ++ +W ++PF   +       +   +     +L + +    + L W+ W  RNK IF G+E
Subjt:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGKE

TrEMBL top hits

e value

%identity

Alignment

A0A251NPF0 Reverse transcriptase domain-containing protein

8.1e-72

37.43

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+YSMSCF++ KGL  + N +M RFWW   ++KR IHW KW  LC  K  GG+GFRDLE FN+ LL KQ WR+L  P+S VAR+ +++Y     FLE
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
         E       F+W S+ WG++LL KG+RWR+G   S+ +    W+P+ S  + + P +      V  L      WN  L+ ++F   +   IL IPLA++ 
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA
        G D  +WHY ++G YSVKSG  +   +K+ +    S +++   K W     L++P+KIK F W+   D++P G  L  R      IC +     E  LHA
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA

Query:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
        +WL   +K +W+ + + ++     + S  +L    +   +      F  L W +WN+RN  IF GK
Subjt:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

A0A5E4FZN9 PREDICTED: retrotransposon

8.1e-72

37.43

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+YSMSCF++ KGL  + N +M RFWW   ++KR IHW KW  LC  K  GG+GFRDLE FN+ LL KQ WR+L  P+S VAR+ +++Y     FLE
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
         E       F+W S+ WG++LL KG+RWR+G+  S+ +    W+P+ S  + + P +     LV  L      WN  L+ ++F   +    L IPLA++ 
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA
        G D  +WHY ++G YSVKSG  +   +K+ +    S +++   K W     L++P+KIK F W+   D++P G  L  R      IC       E  LHA
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA

Query:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
        +WL   +K +W+ + + ++     + S  +L    +   +      F  L W +WN+RN  IF GK
Subjt:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

A0A6J1DAR4 uncharacterized protein LOC111018954

1.4e-71

40.38

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP Y+MSCF+L K LI + + +  RFWWG  +E +KIHW  W +L   K +GGMGFRDLE FNK LL KQ WR+L +P+S ++RVLK +YF+  SF+E
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQD-DWNENLISNLFHPTDARNILSIPLATI
          K      ++W SILWGRDLL KG+RWRIG+ +SV I   NW+P+  TL+ +   R      VS+L++ ++  W  +++ + F P +A+ ILSIP+   
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQD-DWNENLISNLFHPTDARNILSIPLATI

Query:  KGKDIPMWHYNKDGNYSVKSGCHVCF---PQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLH
          +D  +W+Y K G YSV+SG  V     P       S SE++   W+    + +P+KIK+F W+   D +P+G NL +RG      C      GEDS+H
Subjt:  KGKDIPMWHYNKDGNYSVKSGCHVCF---PQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLH

Query:  ALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIF
          W+ + ++ LW  + F  L  P  I   S       + L++ +F    +++W +WNQRN   F
Subjt:  ALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIF

A0A803QH07 Uncharacterized protein

2.1e-72

36.91

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Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        Q+IP+Y+MSCFKL+K    +   +M  FWWG  +   KIHW +W +LC  K +GGMGFR    FN+ LL KQ WR+   PDS ++R+LK +YF  +SFL+
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
                 + W SI WGR+LL KG+R+++G+ + +   +  WIPS+ + RP+  Y G P+  VS L+N   +WN  L+++ F P D   ILSIPL+   
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL
         +D  +WH++  G+Y+VKSG H+    ++ L  S S+     W +  +L +P KI++F WK  +  +P    L +R  +    C   +   E   HAL+ 
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWL

Query:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
          ++KN+WKE+ F             D + +      + +F  F+ LLW IW  RN+V   GK
Subjt:  SRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

8.1e-72

37.43

Show/hide

Query:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        QAIP+YSMSCF++ KGL  + N +M RFWW   ++KR IHW KW  LC  K  GG+GFRDLE FN+ LL KQ WR+L  P+S VAR+ +++Y     FLE
Subjt:  QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK
         E       F+W S+ WG++LL KG+RWR+G   S+ +    W+P+ S  + + P +      V  L      WN  L+ ++F   +   IL IPLA++ 
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIK

Query:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA
        G D  +WHY ++G YSVKSG  +   +K+ +    S +++   K W     L++P+KIK F W+   D++P G  L  R      IC +     E  LHA
Subjt:  GKDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKME---KLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHA

Query:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK
        +WL   +K +W+ + + ++     + S  +L    +   +      F  L W +WN+RN  IF GK
Subjt:  LWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERNFNCFLILLWAIWNQRNKVIFMGK

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.0e-23

24.4

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Query:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKY----FRYSS
        ++P +SMS   L + ++ + ++L   F WG   EK+K H  KW  +C  K++GG+G R  +  N+ L+ K GWRLL   +S    VL+ KY     R S 
Subjt:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKY----FRYSS

Query:  FLEVEKKKKMLFFVWASILWG-RDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQ-----DDWNENLISNLFHPTDARNI
        +L     K      W SI  G RD+++ G+ W  GD   +      W+     L       GE      T++ +        W+   I           +
Subjt:  FLEVEKKKKMLFFVWASILWG-RDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQ-----DDWNENLISNLFHPTDARNI

Query:  LSIPLATIKG-KDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHY
         ++ L  + G +D   W +++DG +SV+S   +       +D+     M   ++    ++VP ++K F W      + +     RR      +C      
Subjt:  LSIPLATIKG-KDIPMWHYNKDGNYSVKSGCHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHY

Query:  GEDSLHALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERN-------FNCFLILLWAIWNQRNKVIF
         E  LH L        +W        Q      SL +   W  D L +R+          F +++W  W  R   IF
Subjt:  GEDSLHALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMWWFKDKLNERN-------FNCFLILLWAIWNQRNKVIF

P93295 Uncharacterized mitochondrial protein AtMg00310

1.3e-29

42.48

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Query:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKR-KGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        A+P Y+MSCF+LSK L  K    MT FWW   E KRKI W  W  LC  K   GG+GFRDL  FN+ LL KQ +R++  P + ++R+L+S+YF +SS +E
Subjt:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKR-KGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPI
             +   + W SI+ GR+LL++G+   IGD     +    WI   + L P+
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPI

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

3.9e-18

27.52

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Query:  LKSKYFRYSSFLEVEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDD---WNENLISNLFH
        +K++YF+  S L+  K +K   + WAS+L G  LL KG R  IGD  ++ IG  N + S+   RP+       E  ++ L  R+     W+++ IS    
Subjt:  LKSKYFRYSSFLEVEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDD---WNENLISNLFH

Query:  PTDARNILSIPLATIKGKDIPMWHYNKDGNYSVKSGCHVC-------FPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRG
         +D   I  I LA  K  D  +W+YN  G Y+V+SG  +         P  N    S   K  ++W    +L +  K+K F W+A    + +   L  RG
Subjt:  PTDARNILSIPLATIKGKDIPMWHYNKDGNYSVKSGCHVC-------FPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRG

Query:  FVGVEICDRSDHYGEDSLHALWLSRNSKNLWKETPFYHLQWPTTITSL--------------SDLMWWFKD-KLNERNFNCFLILLWAIWNQRNKVIF
              C R     E   HAL+            PF  + W  + +SL              S+++ + +D  +++ +    + L+W IW  RN V+F
Subjt:  FVGVEICDRSDHYGEDSLHALWLSRNSKNLWKETPFYHLQWPTTITSL--------------SDLMWWFKD-KLNERNFNCFLILLWAIWNQRNKVIF

AT4G29090.1 Ribonuclease H-like superfamily protein

5.1e-42

29.27

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Query:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLEV
        A+P+Y+M+CF L K +  +   ++  FWW  ++E + +HW  W +L  +K +GG+GF+D+E FN  LL KQ WR+L+ P+S +A+V KS+YF  S  L  
Subjt:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLEV

Query:  EKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERL--VSTLLNRQD-------DWNENLISNLFHPTDARNIL
            +   FVW SI   +++L +G R  +G+   + I RH W+ S      +   R  P+    VS++L   D       +W +++I  LF   + + I 
Subjt:  EKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERL--VSTLLNRQD-------DWNENLISNLFHPTDARNIL

Query:  SIPLATIKGKDIPMWHYNKDGNYSVKSGCHVC--FPQKNWLDQSCSEK-----MEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICD
         +     +  D   W Y   G+Y+VKSG  V      K    Q  SE       +K+W      Q   KI+ F WK   + +P    L  R       C 
Subjt:  SIPLATIKGKDIPMWHYNKDGNYSVKSGCHVC--FPQKNWLDQSCSEK-----MEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICD

Query:  RSDHYGEDSLHALWLSRNSKNLWKETPF---YHLQWPTTITSLSDLMWWFK----DKLNERNFNCFLILLWAIWNQRNKVIFMGKE
        R     E   H L+    ++  W  +        +W  +I    +L W F     +   E+       LLW +W  RN+++F G+E
Subjt:  RSDHYGEDSLHALWLSRNSKNLWKETPF---YHLQWPTTITSLSDLMWWFK----DKLNERNFNCFLILLWAIWNQRNKVIFMGKE

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

9.0e-31

42.48

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Query:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKR-KGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE
        A+P Y+MSCF+LSK L  K    MT FWW   E KRKI W  W  LC  K   GG+GFRDL  FN+ LL KQ +R++  P + ++R+L+S+YF +SS +E
Subjt:  AIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKR-KGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLE

Query:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPI
             +   + W SI+ GR+LL++G+   IGD     +    WI   + L P+
Subjt:  VEKKKKMLFFVWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPI

Sequences

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CDS sequence

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CAAGCTATCCCTAGCTACTCGATGTCGTGTTTCAAGCTCTCAAAAGGTCTCATTGCTAAATGTAACAAGCTTATGACAAGGTTTTGGTGGGGTGGCAGGGAGGAGAAGCG
GAAAATTCATTGGTGTAAATGGGTGAACTTATGTGGCCATAAAAGAAAAGGTGGGATGGGCTTTCGAGACCTTGAGTGTTTTAATAAAGTGTTATTGGTGAAGCAAGGTT
GGCGGCTTTTGACGAATCCTGATTCTTTTGTGGCTCGTGTTCTTAAAAGCAAATATTTCAGGTACTCATCCTTTCTTGAAGTTGAAAAGAAAAAAAAAATGCTTTTTTTT
GTTTGGGCTAGCATTCTATGGGGGAGGGATTTGCTTACAAAAGGAATTCGGTGGAGAATTGGAGATGAAAATAGCGTGAGTATTGGGAGGCACAACTGGATTCCTTCTAA
TTCTACGTTGAGGCCAATCTATCCTTATAGAGGGGAGCCTGAGAGGCTGGTTTCAACCTTGCTAAACAGACAGGACGACTGGAATGAAAATCTGATAAGTAATTTATTTC
ACCCTACTGATGCGAGGAATATTTTATCTATTCCCCTAGCAACCATAAAAGGTAAAGATATCCCAATGTGGCATTATAACAAAGATGGTAACTACTCTGTGAAAAGTGGT
TGTCATGTTTGTTTCCCTCAAAAGAACTGGCTGGATCAATCATGTAGTGAAAAGATGGAGAAATTGTGGTCTTATTGCTCGCACCTACAAGTCCCATCTAAAATTAAGAT
GTTTGGGTGGAAAGCCTTTAAGGATTACATTCCCTCAGGAGTAAATTTGGGAAGAAGAGGATTTGTAGGAGTTGAAATATGTGATCGGTCTGACCATTATGGAGAAGACT
CTTTACATGCTTTGTGGTTGAGCAGAAATAGCAAGAACCTGTGGAAAGAAACACCATTTTATCACCTTCAATGGCCAACGACGATTACTTCCCTTAGTGATCTGATGTGG
TGGTTCAAGGATAAGCTGAACGAACGAAATTTCAACTGTTTCCTAATTCTGTTATGGGCTATTTGGAACCAACGAAATAAGGTAATTTTTATGGGGAAAGAG

mRNA sequence

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Protein sequence

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QAIPSYSMSCFKLSKGLIAKCNKLMTRFWWGGREEKRKIHWCKWVNLCGHKRKGGMGFRDLECFNKVLLVKQGWRLLTNPDSFVARVLKSKYFRYSSFLEVEKKKKMLFF
VWASILWGRDLLTKGIRWRIGDENSVSIGRHNWIPSNSTLRPIYPYRGEPERLVSTLLNRQDDWNENLISNLFHPTDARNILSIPLATIKGKDIPMWHYNKDGNYSVKSG
CHVCFPQKNWLDQSCSEKMEKLWSYCSHLQVPSKIKMFGWKAFKDYIPSGVNLGRRGFVGVEICDRSDHYGEDSLHALWLSRNSKNLWKETPFYHLQWPTTITSLSDLMW
WFKDKLNERNFNCFLILLWAIWNQRNKVIFMGKE

MS022704 (gene) of Bitter gourd (TR) v1 genome