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MS022716 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022716
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger CCCH domain-containing protein 24
Genome locationscaffold41:740051..740188
RNA-Seq ExpressionMS022716
SyntenyMS022716
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006396 - RNA processing (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1219927.1 Zinc finger CCCH domain-containing protein 24 [Morella rubra]8.2e-0863.04Show/hide
Query:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        NM NT L  HR KSM IS+PFR ++ +A+DLFPHT HCE++MLLE+
Subjt:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
KAG6760719.1 hypothetical protein POTOM_033899 [Populus tomentosa]8.2e-0864.44Show/hide
Query:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        M +  L  HRVKSM IS+PFR ++ VA+DLFPHTPHCE++MLLE+
Subjt:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
KAG6762032.1 hypothetical protein POTOM_032517 [Populus tomentosa]8.2e-0864.44Show/hide
Query:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        M +  L  HRVKSM IS+PFR ++ VA+DLFPHTPHCE++MLLE+
Subjt:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
XP_008463939.1 PREDICTED: zinc finger CCCH domain-containing protein 24 [Cucumis melo]6.3e-0863.04Show/hide
Query:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        NM +  L  HRVKSM IS+PFR ++ +A+DLFPHTPHCE++MLLE+
Subjt:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
XP_034895978.1 zinc finger CCCH domain-containing protein 24 [Populus alba]8.2e-0864.44Show/hide
Query:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        M +  L  HRVKSM IS+PFR ++ VA+DLFPHTPHCE++MLLE+
Subjt:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
TrEMBL top hitse value%identityAlignment
A0A1S3CKC6 zinc finger CCCH domain-containing protein 243.0e-0863.04Show/hide
Query:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        NM +  L  HRVKSM IS+PFR ++ +A+DLFPHTPHCE++MLLE+
Subjt:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
A0A4U5P6S2 Zinc finger CCCH domain-containing protein 24 isoform X14.0e-0864.44Show/hide
Query:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        M +  L  HRVKSM IS+PFR ++ VA+DLFPHTPHCE++MLLE+
Subjt:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
A0A5D3CSW9 Zinc finger CCCH domain-containing protein 243.0e-0863.04Show/hide
Query:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        NM +  L  HRVKSM IS+PFR ++ +A+DLFPHTPHCE++MLLE+
Subjt:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
A0A6A1W766 Zinc finger CCCH domain-containing protein 244.0e-0863.04Show/hide
Query:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        NM NT L  HR KSM IS+PFR ++ +A+DLFPHT HCE++MLLE+
Subjt:  NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
A0A6M2E9X7 C3H1-type domain-containing protein4.0e-0864.44Show/hide
Query:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        M +  L  HRVKSM IS+PFR ++ VA+DLFPHTPHCE++MLLE+
Subjt:  MCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
SwissProt top hitse value%identityAlignment
Q5RFM7 tRNA (uracil(54)-C(5))-methyltransferase homolog3.4e-0453.33Show/hide
Query:  ISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        + +PF   QVV +DLFPHTPHCE+++L  +
Subjt:  ISQPFRFMQVVAIDLFPHTPHCEILMLLEK
Q8IZ69 tRNA (uracil-5-)-methyltransferase homolog A9.8e-0462.96Show/hide
Query:  PFRFMQVVAIDLFPHTPHCEILMLLEK
        PFR ++ VA+DLFP TPHCE+L+L E+
Subjt:  PFRFMQVVAIDLFPHTPHCEILMLLEK
Q8L7S3 Zinc finger CCCH domain-containing protein 245.5e-0756.1Show/hide
Query:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        +L  HR KSM  S+ FR ++ +A+DLFPHT HCE++MLLE+
Subjt:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
Q96GJ1 tRNA (uracil(54)-C(5))-methyltransferase homolog9.8e-0450Show/hide
Query:  ISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        + +PF   Q V +DLFPHTPHCE+++L  +
Subjt:  ISQPFRFMQVVAIDLFPHTPHCEILMLLEK
Arabidopsis top hitse value%identityAlignment
AT2G28450.1 zinc finger (CCCH-type) family protein3.9e-0856.1Show/hide
Query:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        +L  HR KSM  S+ FR ++ +A+DLFPHT HCE++MLLE+
Subjt:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
AT2G28450.2 zinc finger (CCCH-type) family protein3.9e-0856.1Show/hide
Query:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK
        +L  HR KSM  S+ FR ++ +A+DLFPHT HCE++MLLE+
Subjt:  SLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATATGTGCAATACTAGTCTTACTTGGCACAGGGTGAAATCCATGTCAATTTCACAGCCTTTTCGGTTTATGCAAGTCGTGGCTATAGATCTTTTTCCTCATACACCACA
CTGTGAGATTCTGATGTTGCTGGAGAAG
mRNA sequenceShow/hide mRNA sequence
AATATGTGCAATACTAGTCTTACTTGGCACAGGGTGAAATCCATGTCAATTTCACAGCCTTTTCGGTTTATGCAAGTCGTGGCTATAGATCTTTTTCCTCATACACCACA
CTGTGAGATTCTGATGTTGCTGGAGAAG
Protein sequenceShow/hide protein sequence
NMCNTSLTWHRVKSMSISQPFRFMQVVAIDLFPHTPHCEILMLLEK