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MS022717 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022717
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold41:753960..754124
RNA-Seq ExpressionMS022717
SyntenyMS022717
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0557.14Show/hide
Query:  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE
        +G M  E WIP++YEKLPD CY CG+V H++Q+C+
Subjt:  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE
KAF4350434.1 hypothetical protein F8388_005458 [Cannabis sativa]8.6e-0452.78Show/hide
Query:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
        M DE+WI   YE+LPD CY CG + H+   C R+LE
Subjt:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
KAF4373373.1 hypothetical protein F8388_026204 [Cannabis sativa]8.6e-0452.78Show/hide
Query:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
        M DE+WI   YE+LPD CY CG + H+   C R+LE
Subjt:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein3.1e-0748.21Show/hide
Query:  LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLEGT--KKTYIWQLYDR
        + +G+M  E  IP+TYEKL D CY+CG + H+LQ+CE  +EG   K+  IW L +R
Subjt:  LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLEGT--KKTYIWQLYDR
A0A5D3C0K2 Reverse transcriptase5.8e-0657.14Show/hide
Query:  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE
        +G M  E WIP++YEKLPD CY CG+V H++Q+C+
Subjt:  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE
A0A7J6DWD2 Uncharacterized protein4.2e-0452.78Show/hide
Query:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
        M DE+WI   YE+LPD CY CG + H+   C R+LE
Subjt:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
A0A7J6FRL2 Uncharacterized protein4.2e-0452.78Show/hide
Query:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
        M DE+WI   YE+LPD CY CG + H+   C R+LE
Subjt:  MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
A0A803P119 Uncharacterized protein5.4e-0443.9Show/hide
Query:  LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
        L +  +VD++W+ + YEKLPD+CY CG++ H    C  +LE
Subjt:  LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGAATATGGGATCAATGGTTGATGAAATGTGGATACCAATTACTTATGAGAAGCTACCAGACTTATGCTATAGTTGTGGAAAGGTATGGCATATTTTACAGGACTGTGA
ACGGTACTTGGAAGGTACAAAGAAGACCTACATATGGCAATTGTATGATAGAAAT
mRNA sequenceShow/hide mRNA sequence
CTGAATATGGGATCAATGGTTGATGAAATGTGGATACCAATTACTTATGAGAAGCTACCAGACTTATGCTATAGTTGTGGAAAGGTATGGCATATTTTACAGGACTGTGA
ACGGTACTTGGAAGGTACAAAGAAGACCTACATATGGCAATTGTATGATAGAAAT
Protein sequenceShow/hide protein sequence
LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLEGTKKTYIWQLYDRN