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MS022721 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022721
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold41:853805..854058
RNA-Seq ExpressionMS022721
SyntenyMS022721
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB66629.1 hypothetical protein L484_024925 [Morus notabilis]9.7e-1548.05Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKLPDFCYGCGK GH  ++C
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.1e-1551.95Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        LGN +G FE +E++ +  CWG  LRVRV+ DV K L  G+ + + G M   WIPI YE+LPDF Y CG+L H++KDC
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.0e-1651.25Show/hide
Query:  VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDCD
        + LGN +G F  ++ ++ G  WG +LR+RV ID++K LR G+ I I G M   WIPI YE+LPDFCY CG +GH   DCD
Subjt:  VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDCD

XP_024018029.1 uncharacterized protein LOC112090594 [Morus notabilis]9.7e-1548.05Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKLPDFCYGCGK GH  ++C
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]5.7e-1543.37Show/hide
Query:  KTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAMLERWIPITYEKLPDFCYGCGKLGHVIKDCDL
        K V  +GN +G  E+I+ + D   WG+ +++R+ +DV+K L  G  I +G     W+  TYE+LP FCYGCG+LGH  KDC +
Subjt:  KTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAMLERWIPITYEKLPDFCYGCGKLGHVIKDCDL

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein1.9e-1650.59Show/hide
Query:  RKTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAML-ERWIPITYEKLPDFCYGCGKLGHVIKDCDL
        RK VVAL N +  FE++E  +  R +G+ L+VR +IDV ++L     IK+GAM  E+ IP+TYEKL DFCY CG LGHV+++C++
Subjt:  RKTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAML-ERWIPITYEKLPDFCYGCGKLGHVIKDCDL

A0A6J1BSZ1 uncharacterized protein LOC1110054815.5e-1651.95Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        LGN +G FE +E++ +  CWG  LRVRV+ DV K L  G+ + + G M   WIPI YE+LPDF Y CG+L H++KDC
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDC

A0A6J1DU55 uncharacterized protein LOC1110231351.5e-1651.25Show/hide
Query:  VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDCD
        + LGN +G F  ++ ++ G  WG +LR+RV ID++K LR G+ I I G M   WIPI YE+LPDFCY CG +GH   DCD
Subjt:  VALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKI-GAMLERWIPITYEKLPDFCYGCGKLGHVIKDCD

W9RBJ0 CCHC-type domain-containing protein4.7e-1548.05Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKLPDFCYGCGK GH  ++C
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC

W9RRS1 CCHC-type domain-containing protein4.7e-1548.05Show/hide
Query:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC
        +G+++G    ++ DD GRCWGQ +RVRV +D++K +R  V I +G      W  + YEKLPDFCYGCGK GH  ++C
Subjt:  LGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIG-AMLERWIPITYEKLPDFCYGCGKLGHVIKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAGACGGTAGTGGCCCTCGGCAACATGGTTGGGAAGTTTGAAAAAATAGAAACGGATGATGATGGAAGATGCTGGGGCCAAACTTTACGAGTGAGAGTTCAAATAGA
TGTGAGTAAAGCTTTACGCGGAGGGGTGATGATAAAGATTGGCGCCATGCTGGAGCGCTGGATACCTATAACGTATGAAAAATTGCCAGATTTCTGCTATGGGTGTGGCA
AACTTGGTCATGTGATAAAGGATTGTGACCTG
mRNA sequenceShow/hide mRNA sequence
AGGAAGACGGTAGTGGCCCTCGGCAACATGGTTGGGAAGTTTGAAAAAATAGAAACGGATGATGATGGAAGATGCTGGGGCCAAACTTTACGAGTGAGAGTTCAAATAGA
TGTGAGTAAAGCTTTACGCGGAGGGGTGATGATAAAGATTGGCGCCATGCTGGAGCGCTGGATACCTATAACGTATGAAAAATTGCCAGATTTCTGCTATGGGTGTGGCA
AACTTGGTCATGTGATAAAGGATTGTGACCTG
Protein sequenceShow/hide protein sequence
RKTVVALGNMVGKFEKIETDDDGRCWGQTLRVRVQIDVSKALRGGVMIKIGAMLERWIPITYEKLPDFCYGCGKLGHVIKDCDL