; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022722 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022722
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold41:859565..859983
RNA-Seq ExpressionMS022722
SyntenyMS022722
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR005135 - Endonuclease/exonuclease/phosphatase
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8408042.1 hypothetical protein HHK36_007182 [Tetracentron sinense]1.0e-2947.89Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKE--DRYS
        MK LSWN +GLGNP T+R L ++V+  +P  VFLMETR + Q+ +K+K  L F   + V SVG SGGL LLW  +LD+ + S+S+ HID V+    +R  
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKE--DRYS

Query:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        WR +G+Y  P   K+ ETW+LI  L     +PW+  GDFNEI
Subjt:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

TXG51391.1 hypothetical protein EZV62_023915 [Acer yangbiense]4.2e-3151.09Show/hide
Query:  LSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSWRFS
        LSWNVRGLGNP  + AL  L++ H+P LVFL ET+      ++++  L+F+  LCV SVG+S GL+LLW     V ++SFS GHIDA V KED + WRF 
Subjt:  LSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSWRFS

Query:  GIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNE
        G Y +P   KR  +W L+ RL +I++LPW+ G DFNE
Subjt:  GIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNE

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.9e-3656.43Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRYSWR
        MK L WNV GLGNP T R LR+LVR   P LVFL ET+     + + K EL+FDCC+ V S G SGGLMLLW+S+ +VRI S S GHID++I +   SWR
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRYSWR

Query:  FSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        F+G Y  P   KR  +W L+ RL  + DLPWI+GGDFNEI
Subjt:  FSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

XP_024039545.1 uncharacterized protein LOC112098147 [Citrus clementina]7.9e-3048.94Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSW
        MKILSWN+RGLGNPR   AL+ +++ H+P LVFL ET+ +  +  +V  +LN++ C  V S+G  GGL LLW SE +V+I SF+Q HIDA V+ E+    
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSW

Query:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        R +G+Y  P   +R+ TW L+ RL   S  PW   GDFNEI
Subjt:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

XP_030929385.1 uncharacterized protein LOC115955407 [Quercus lobata]6.1e-3046.81Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDR-YSW
        M+ L WN RGLGNPR++R LR++V+  +P  VFL ET+ R+Q+ ++ K  + F   L +PS G SGGL LLW  E++V + SFS  HIDA++ EDR + W
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDR-YSW

Query:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        R +G Y  P   +R+E+W+L+  L     LPW+  G+FNEI
Subjt:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

TrEMBL top hitse value%identityAlignment
A0A1U8JQZ9 uncharacterized protein LOC1079079631.1e-2945.77Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKE--DRYS
        MKILSWNVR LGNPRT+R LRH ++ H P ++FLMET+      +K++    F C + V S+GS GGL L W   + + + SFS  HID +++E  D   
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKE--DRYS

Query:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        WRF+G Y  P    R + W+L+ +L    D PW++ GDFNEI
Subjt:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

A0A2N9HWG1 Reverse transcriptase domain-containing protein2.9e-3047.52Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSW
        M I+SWN RGLGN R + AL +LV+S  P ++FLMET+  ++  + ++ +L F  C  VPS+G SGGL LLW+ ++ + I +FS  HIDA V  +    W
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSW

Query:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        RF+G Y  PI  +RRE+W L+ +L ++  LPW+L GDFNEI
Subjt:  RFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

A0A5B6WSX4 Reverse transcriptase1.5e-2947.89Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRY--S
        MK L WNVRGLG+ R +R LR L++ H+P LVFLMET+   Q    V+    FD  + V + GS GGL L W  +LDV++ SFS+ HID +IKE+     
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRY--S

Query:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        W+F+G Y  P  + +   WDL+ RL   SD PW++ GDFNEI
Subjt:  WRFSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

A0A5C7H399 CCHC-type domain-containing protein2.0e-3151.09Show/hide
Query:  LSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSWRFS
        LSWNVRGLGNP  + AL  L++ H+P LVFL ET+      ++++  L+F+  LCV SVG+S GL+LLW     V ++SFS GHIDA V KED + WRF 
Subjt:  LSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDA-VIKEDRYSWRFS

Query:  GIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNE
        G Y +P   KR  +W L+ RL +I++LPW+ G DFNE
Subjt:  GIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNE

A0A6J1DUG8 uncharacterized protein LOC1110241359.4e-3756.43Show/hide
Query:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRYSWR
        MK L WNV GLGNP T R LR+LVR   P LVFL ET+     + + K EL+FDCC+ V S G SGGLMLLW+S+ +VRI S S GHID++I +   SWR
Subjt:  MKILSWNVRGLGNPRTLRALRHLVRSHNP-LVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRYSWR

Query:  FSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI
        F+G Y  P   KR  +W L+ RL  + DLPWI+GGDFNEI
Subjt:  FSGIYRQPIQEKRRETWDLIGRLHNISDLPWILGGDFNEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCTTGAGTTGGAATGTTCGGGGGTTGGGGAATCCCCGAACATTGAGAGCGCTACGTCATCTAGTGCGTAGCCATAACCCCTTGGTTTTTCTAATGGAAACCAG
ATGTAGACTTCAAAATGATCAAAAGGTTAAGGCAGAATTGAATTTTGATTGTTGTTTATGTGTTCCAAGTGTTGGCAGTAGTGGGGGATTGATGTTACTTTGGCATAGTG
AGTTGGATGTTCGAATTCTGTCTTTCTCACAAGGACACATTGATGCGGTGATTAAGGAAGATAGGTACAGTTGGCGATTTTCAGGTATATATAGACAACCGATTCAGGAG
AAACGTCGGGAAACGTGGGACCTTATTGGGCGTCTTCACAATATCTCTGATCTTCCTTGGATTTTAGGAGGAGACTTTAATGAGATT
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCTTGAGTTGGAATGTTCGGGGGTTGGGGAATCCCCGAACATTGAGAGCGCTACGTCATCTAGTGCGTAGCCATAACCCCTTGGTTTTTCTAATGGAAACCAG
ATGTAGACTTCAAAATGATCAAAAGGTTAAGGCAGAATTGAATTTTGATTGTTGTTTATGTGTTCCAAGTGTTGGCAGTAGTGGGGGATTGATGTTACTTTGGCATAGTG
AGTTGGATGTTCGAATTCTGTCTTTCTCACAAGGACACATTGATGCGGTGATTAAGGAAGATAGGTACAGTTGGCGATTTTCAGGTATATATAGACAACCGATTCAGGAG
AAACGTCGGGAAACGTGGGACCTTATTGGGCGTCTTCACAATATCTCTGATCTTCCTTGGATTTTAGGAGGAGACTTTAATGAGATT
Protein sequenceShow/hide protein sequence
MKILSWNVRGLGNPRTLRALRHLVRSHNPLVFLMETRCRLQNDQKVKAELNFDCCLCVPSVGSSGGLMLLWHSELDVRILSFSQGHIDAVIKEDRYSWRFSGIYRQPIQE
KRRETWDLIGRLHNISDLPWILGGDFNEI