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MS022723 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022723
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold41:869428..869844
RNA-Seq ExpressionMS022723
SyntenyMS022723
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]9.1e-1032.84Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG
        W+ P    + +NTDAS+  S Q  GLG ++ +   +V+    +++++  S+++ EA   +EG+    K GV+ P+ +ETDS  + NL ++  EDL+E G 
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG

Query:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR
        +V +       S    F  V RE N   H LA+R
Subjt:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.3e-1137.89Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLT
        W +PP + W LNTDASWSE  + GG+GW+LC    E++  GN  +     +N +E   I+ G+  +      PI +E+DS  V  L+ +   DLT
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-1232.33Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGGV
        W  P  ++W LNT+A+W      GG+GW+L     EVI+   R + +  ++  +E  AI EG+  ++     PI +E+DS    +LL+   +D TE+  +
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGGV

Query:  VEEILKLRDCSGVTCFVKVNREANHCTHSLAKR
        +EEI ++     +     ++REAN   H LA+R
Subjt:  VEEILKLRDCSGVTCFVKVNREANHCTHSLAKR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.3e-3554.41Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGG
        W  PP+H WTLN DASWS+S  RGG+GW++ SWD +++  GNRFV++C+++ L+EA+AILEG+  L   GV  P+ +ETDS  V +LLN   EDLT+ G 
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGG

Query:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKRVA
        VVEEIL LRD   +  F KV RE N C HSLA+R +
Subjt:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKRVA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.7e-1232.62Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGM------HCLKFGVSF--PICVETDSEVVANLLNEVGE
        W  P  ++W LNTDA+W      GG+GW+L     EVI+   R + +  ++  +E  AI EG+      HC         PI +E+DS    +LL+   +
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGM------HCLKFGVSF--PICVETDSEVVANLLNEVGE

Query:  DLTEVGGVVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR
        D TE+  ++EEI ++ +   +     ++REAN   H LA+R
Subjt:  DLTEVGGVVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase4.9e-0934.85Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG
        W++P   TW +NTDAS+S S    GLG V+  ++ +++  G R +   +     E +AIL G    L+ G++  I +E+DS +  + +N+    L E G 
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG

Query:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLA
        ++EEI ++        F  VNREAN   HSLA
Subjt:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLA

A0A6J1CIF1 uncharacterized protein LOC1110112374.4e-1032.84Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG
        W+ P    + +NTDAS+  S Q  GLG ++ +   +V+    +++++  S+++ EA   +EG+    K GV+ P+ +ETDS  + NL ++  EDL+E G 
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMH-CLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGG

Query:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR
        +V +       S    F  V RE N   H LA+R
Subjt:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKR

A0A6J1CP26 uncharacterized protein LOC1110134125.6e-1332.33Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGGV
        W  P  ++W LNT+A+W      GG+GW+L     EVI+   R + +  ++  +E  AI EG+  ++     PI +E+DS    +LL+   +D TE+  +
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGGV

Query:  VEEILKLRDCSGVTCFVKVNREANHCTHSLAKR
        +EEI ++     +     ++REAN   H LA+R
Subjt:  VEEILKLRDCSGVTCFVKVNREANHCTHSLAKR

A0A6J1CQG0 uncharacterized protein LOC1110132166.2e-1237.89Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLT
        W +PP + W LNTDASWSE  + GG+GW+LC    E++  GN  +     +N +E   I+ G+  +      PI +E+DS  V  L+ +   DLT
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLT

A0A6J1DNV9 uncharacterized protein LOC1110224036.1e-3654.41Show/hide
Query:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGG
        W  PP+H WTLN DASWS+S  RGG+GW++ SWD +++  GNRFV++C+++ L+EA+AILEG+  L   GV  P+ +ETDS  V +LLN   EDLT+ G 
Subjt:  WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGG

Query:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKRVA
        VVEEIL LRD   +  F KV RE N C HSLA+R +
Subjt:  VVEEILKLRDCSGVTCFVKVNREANHCTHSLAKRVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.1e-0831.85Show/hide
Query:  PPLHTWT-LNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGGVV
        PP H W   NTDA+W+   +R G+GWVL +   EV  +G R +    S+   E  A+   +  L +F  ++ +  E+DS+V+  +LN   E    +   +
Subjt:  PPLHTWT-LNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCL-KFGVSFPICVETDSEVVANLLNEVGEDLTEVGGVV

Query:  EEILKLRDCSGVTCFVKVNREANHCTHSLAKRVAR
        +++ +L        FV + RE N    +LA+RVAR
Subjt:  EEILKLRDCSGVTCFVKVNREANHCTHSLAKRVAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTTTCCCCTCCTCTTCATACCTGGACTCTCAATACCGACGCCTCTTGGTCGGAATCTCTTCAACGGGGCGGTTTGGGGTGGGTGCTCTGCAGCTGGGACAGAGAAGT
CATCCGAGTCGGTAATCGTTTTGTGGATTCTTGTAGTAGTATGAATTTAATCGAAGCAAACGCGATTTTGGAGGGGATGCATTGTCTGAAATTTGGCGTGTCCTTCCCAA
TATGTGTGGAGACAGATTCGGAGGTTGTTGCAAATTTGCTCAATGAGGTGGGCGAAGATCTCACGGAAGTTGGAGGGGTTGTTGAGGAAATCCTAAAATTGAGGGATTGT
AGTGGGGTTACCTGTTTTGTGAAAGTGAATAGAGAGGCTAATCACTGTACACATTCACTTGCTAAGAGGGTTGCTAGATCTTTGGAG
mRNA sequenceShow/hide mRNA sequence
TGGGTTTCCCCTCCTCTTCATACCTGGACTCTCAATACCGACGCCTCTTGGTCGGAATCTCTTCAACGGGGCGGTTTGGGGTGGGTGCTCTGCAGCTGGGACAGAGAAGT
CATCCGAGTCGGTAATCGTTTTGTGGATTCTTGTAGTAGTATGAATTTAATCGAAGCAAACGCGATTTTGGAGGGGATGCATTGTCTGAAATTTGGCGTGTCCTTCCCAA
TATGTGTGGAGACAGATTCGGAGGTTGTTGCAAATTTGCTCAATGAGGTGGGCGAAGATCTCACGGAAGTTGGAGGGGTTGTTGAGGAAATCCTAAAATTGAGGGATTGT
AGTGGGGTTACCTGTTTTGTGAAAGTGAATAGAGAGGCTAATCACTGTACACATTCACTTGCTAAGAGGGTTGCTAGATCTTTGGAG
Protein sequenceShow/hide protein sequence
WVSPPLHTWTLNTDASWSESLQRGGLGWVLCSWDREVIRVGNRFVDSCSSMNLIEANAILEGMHCLKFGVSFPICVETDSEVVANLLNEVGEDLTEVGGVVEEILKLRDC
SGVTCFVKVNREANHCTHSLAKRVARSLE