CuGenDBv2

Gene ID	MS022725
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I assembly protein Ycf4
Genome location	scaffold41:950024..950395
RNA-Seq Expression	MS022725
Synteny	MS022725
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003359 - Photosystem I Ycf4, assembly

Homology

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GenBank top hits

e value

%identity

Alignment

QKX48484.1 photosystem I assembly protein Ycf4 [Luffa acutangula]

3.6e-58

95.8

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYM+IRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

YP_009456072.1 photosystem I assembly protein Ycf4 [Momordica charantia]

1.6e-58

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

YP_009751749.1 photosystem I assembly protein Ycf4 [Herpetospermum pedunculosum]

1.6e-58

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

YP_009752170.1 photosystem I assembly protein Ycf4 [Linnaeosicyos amara]

1.6e-58

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

YP_009752592.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla]

1.6e-58

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

TrEMBL top hits

e value

%identity

Alignment

A0A514YKU3 Photosystem I assembly protein Ycf4

7.8e-59

96.64

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

A0A6H0EP62 Photosystem I assembly protein Ycf4

7.8e-59

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

A0A6H0EPD9 Photosystem I assembly protein Ycf4

7.8e-59

96.64

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

A0A6H0ESZ3 Photosystem I assembly protein Ycf4

7.8e-59

96.64

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

A0A6M3RTZ8 Photosystem I assembly protein Ycf4

7.8e-59

96.64

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

SwissProt top hits

e value

%identity

Alignment

A0ZZ46 Photosystem I assembly protein Ycf4

1.8e-60

94.12

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Q09G35 Photosystem I assembly protein Ycf4

4.4e-59

92.44

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRF MKDIQSIRIEVKEG+Y RRVLYMEIRGQGAIPLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Q2L913 Photosystem I assembly protein Ycf4

1.8e-60

94.12

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Q2MIH6 Photosystem I assembly protein Ycf4

4.4e-59

91.6

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTI WNVGSGYD+FDRKEGIVCIFRWGFP KN RIFLRFL+KDIQS+RIEVKEGIYARRVLYM+IRGQG+IPLTRTD+NLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Q2QD78 Photosystem I assembly protein Ycf4

2.6e-59

94.96

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Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFISSYLWCTILWNVGSGYD+FDRKE IV IFRWGFP KN RIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00520.1 unfolded protein binding

1.4e-55

88.24

Show/hide

Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE
        MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGIV IFRWGFP K+ RIFLRF MKDIQSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T RE
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPRE

Query:  IEQKAAELAYFLRVPIESF
        IEQKAAELAYFLRVPIE F
Subjt:  IEQKAAELAYFLRVPIESF

Sequences

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CDS sequence

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ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCAATTCGATAGAAAAGAAGGAATAGT
GTGTATTTTTCGTTGGGGGTTTCCTATAAAAAATTGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCAC
GTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACGCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTAT
TTCTTGCGTGTACCAATTGAAAGTTTTTTGAAAAATGAAGTT

mRNA sequence

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Protein sequence

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MSFYGIAGLFISSYLWCTILWNVGSGYDQFDRKEGIVCIFRWGFPIKNCRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAY
FLRVPIESFLKNEV

MS022725 (gene) of Bitter gourd (TR) v1 genome