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MS022726 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022726
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationscaffold41:960222..960347
RNA-Seq ExpressionMS022726
SyntenyMS022726
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005507 - copper ion binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067906.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.5e-0869.05Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        K+ KD+KTIHG LLNHM+D +FDLFV+QKSAK IW T++S+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
PWA86048.1 ribosomal protein L2, plastid [Artemisia annua]1.5e-0869.05Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KT  G LLNHM++SLFDLF++QKSAK IW+T+E KY
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]8.9e-0971.43Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF KD+KTIH  LLNHMN+SLFD FV++KSAK +WDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]4.7e-1078.57Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KTI G LLNHMND LFDLFV QKSAK IWDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]1.2e-1078.57Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KT+ G LLNHMNDSLFDLFV QKSAK IWDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
TrEMBL top hitse value%identityAlignment
A0A2U1PJW3 Ribosomal protein L2, plastid7.3e-0969.05Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KT  G LLNHM++SLFDLF++QKSAK IW+T+E KY
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
A0A5A7VMW4 Ty1-copia retrotransposon protein7.3e-0969.05Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        K+ KD+KTIHG LLNHM+D +FDLFV+QKSAK IW T++S+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
A0A6J1DAK7 uncharacterized protein LOC1110185594.3e-0971.43Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF KD+KTIH  LLNHMN+SLFD FV++KSAK +WDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
A0A6J1DHJ4 uncharacterized protein LOC1110211472.3e-1078.57Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KTI G LLNHMND LFDLFV QKSAK IWDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
A0A6J1DWN1 uncharacterized protein LOC1110251976.0e-1178.57Show/hide
Query:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
        KF+KD+KT+ G LLNHMNDSLFDLFV QKSAK IWDT+ES+Y
Subjt:  KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTTGATAAAGACAGCAAAACGATTCATGGGCAGCTCCTCAACCACATGAATGACTCCCTCTTTGATTTGTTCGTATCCCAAAAATCTGCAAAGACTATTTGGGACAC
CATAGAGTCTAAATAT
mRNA sequenceShow/hide mRNA sequence
AAGTTTGATAAAGACAGCAAAACGATTCATGGGCAGCTCCTCAACCACATGAATGACTCCCTCTTTGATTTGTTCGTATCCCAAAAATCTGCAAAGACTATTTGGGACAC
CATAGAGTCTAAATAT
Protein sequenceShow/hide protein sequence
KFDKDSKTIHGQLLNHMNDSLFDLFVSQKSAKTIWDTIESKY