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MS022735 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022735
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationscaffold73:14899..14997
RNA-Seq ExpressionMS022735
SyntenyMS022735
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_004072452.1 RNA polymerase beta II subunit [Corynocarpus laevigatus]2.3e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

YP_009458679.1 RNA polymerase beta' subunit [Fagus engleriana]2.3e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

YP_009762866.1 RNA polymerase beta'' subunit [Gleditsia sinensis]2.3e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

YP_009769499.1 RNA polymerase beta'' subunit [Gleditsia microphylla]2.3e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

YP_010010078.1 RNA polymerase beta'' subunit [Fagus japonica]2.3e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

TrEMBL top hitse value%identityAlignment
A0A5P8HA87 DNA-directed RNA polymerase subunit beta''1.1e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

A0A5P8YUQ8 DNA-directed RNA polymerase subunit beta''1.1e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

A0A6G9L4E2 DNA-directed RNA polymerase subunit beta''1.1e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

A0A6G9L6M0 DNA-directed RNA polymerase subunit beta''1.1e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

E5KU86 DNA-directed RNA polymerase subunit beta''1.1e-0481.82Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YIY YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

SwissProt top hitse value%identityAlignment
A6MM26 DNA-directed RNA polymerase subunit beta''4.4e-0678.79Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YI  YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

A6MMB2 DNA-directed RNA polymerase subunit beta''4.4e-0678.79Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YI  YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

A8SE78 DNA-directed RNA polymerase subunit beta''4.4e-0678.79Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YI  YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

Q06H07 DNA-directed RNA polymerase subunit beta''4.4e-0678.79Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YI  YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

Q4VZP3 DNA-directed RNA polymerase subunit beta''4.4e-0678.79Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE
        K KFNE+LVH TRTRHGHPAFL  YI  YVTIE
Subjt:  KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE

Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein2.2e-0586.36Show/hide
Query:  KYKFNENLVHLTRTRHGHPAFL
        K KFNE+LVH TRTRHGHPAFL
Subjt:  KYKFNENLVHLTRTRHGHPAFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATATAAATTCAATGAGAATTTGGTTCATCTCACACGTACACGTCATGGACATCCTGCTTTTCTTATGCTATATATATACCGGTATGTAACTATTGAG
mRNA sequenceShow/hide mRNA sequence
AAATATAAATTCAATGAGAATTTGGTTCATCTCACACGTACACGTCATGGACATCCTGCTTTTCTTATGCTATATATATACCGGTATGTAACTATTGAG
Protein sequenceShow/hide protein sequence
KYKFNENLVHLTRTRHGHPAFLMLYIYRYVTIE