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MS022741 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022741
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold73:107276..107446
RNA-Seq ExpressionMS022741
SyntenyMS022741
Gene Ontology termsGO:0048564 - photosystem I assembly (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI25209.3 unnamed protein product, partial [Vitis vinifera]4.9e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
QWQ52078.1 hypothetical chloroplast RF34 [Pternopetalum vulgare]4.9e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
YP_009572271.1 hypothetical chloroplast RF34 [Debregeasia orientalis]2.9e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
YP_009994051.1 photosystem I assembly protein Ycf3 [Corydalis inopinata]4.9e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
YP_010138559.1 hypothetical chloroplast RF34 [Boehmeria nivea]2.9e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
TrEMBL top hitse value%identityAlignment
A0A1V0IZM2 Photosystem I assembly protein Ycf31.4e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
A0A6B9TR65 Photosystem I assembly protein Ycf31.4e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
A0A6B9TRR9 Photosystem I assembly protein Ycf31.4e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
A0A6B9TSP5 Photosystem I assembly protein Ycf31.4e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
A0A6B9TTG3 Photosystem I assembly protein Ycf31.4e-1067.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E  HNYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
SwissProt top hitse value%identityAlignment
A7M967 Photosystem I assembly protein Ycf31.1e-1267.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT N EHMKALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
A8W3C5 Photosystem I assembly protein Ycf31.1e-1267.92Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT N EHMKALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
P61843 Photosystem I assembly protein Ycf35.4e-1266.04Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
Q09X16 Photosystem I assembly protein Ycf33.2e-1266.04Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
Q4VZH4 Photosystem I assembly protein Ycf33.2e-1266.04Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT+N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.8e-1366.04Show/hide
Query:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE
        +G Y+E   NYY+AM+LEIDP  R Y  YNI LIHT N EH KALEYYFR LE
Subjt:  KGIYSEVQHNYYKAMQLEIDPLSR-YAPYNISLIHTKNNEHMKALEYYFRELE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGAACGCTGGATCAAAGGAATTTATTCAGAAGTTCAACATAATTATTATAAAGCTATGCAACTAGAAATTGATCCCTTATCGAGGTATGCACCATATAACATAAGTCT
TATCCACACAAAGAACAACGAACATATGAAGGCTTTGGAATATTATTTTCGAGAACTAGAA
mRNA sequenceShow/hide mRNA sequence
AAAGAACGCTGGATCAAAGGAATTTATTCAGAAGTTCAACATAATTATTATAAAGCTATGCAACTAGAAATTGATCCCTTATCGAGGTATGCACCATATAACATAAGTCT
TATCCACACAAAGAACAACGAACATATGAAGGCTTTGGAATATTATTTTCGAGAACTAGAA
Protein sequenceShow/hide protein sequence
KERWIKGIYSEVQHNYYKAMQLEIDPLSRYAPYNISLIHTKNNEHMKALEYYFRELE