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MS022745 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022745
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationscaffold73:143692..143841
RNA-Seq ExpressionMS022745
SyntenyMS022745
Gene Ontology termsGO:0010587 - miRNA catabolic process (biological process)
GO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0010494 - cytoplasmic stress granule (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135767.1 uncharacterized protein LOC101205010 isoform X1 [Cucumis sativus]1.5e-1892Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQ+VA+PLDPIDQTHLAW ITVHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
XP_008450552.1 PREDICTED: uncharacterized protein LOC103492118 [Cucumis melo]4.3e-1890Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQ+VA+PLDPIDQTHLAW I+VHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
XP_022159873.1 uncharacterized protein LOC111026160 [Momordica charantia]1.0e-1998Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQSVA+PLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
XP_038880060.1 uncharacterized protein LOC120071757 isoform X1 [Benincasa hispida]1.6e-1790Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQSVA+PLD IDQTH+AW ITVHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
XP_038880062.1 uncharacterized protein LOC120071757 isoform X2 [Benincasa hispida]1.6e-1790Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQSVA+PLD IDQTH+AW ITVHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
TrEMBL top hitse value%identityAlignment
A0A0A0LWB0 3'-5' exonuclease domain-containing protein7.1e-1992Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQ+VA+PLDPIDQTHLAW ITVHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
A0A1S3BPE9 uncharacterized protein LOC1034921182.1e-1890Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQ+VA+PLDPIDQTHLAW I+VHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
A0A6J1E030 uncharacterized protein LOC1110261604.9e-2098Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MGFDQSVA+PLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
A0A6J1HVL7 uncharacterized protein LOC111467860 isoform X21.3e-1788Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MG DQ+VA+PLDPIDQTHLAW I VHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
A0A6J1HXY3 uncharacterized protein LOC111467860 isoform X11.3e-1788Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MG DQ+VA+PLDPIDQTHLAW I VHSLSDLSYISPVVFLYLLKECY+RG
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-0852Show/hide
Query:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG
        MG D   AD     D+   A  + +H+ SDL+Y+SPVVFLYLLKECY  G
Subjt:  MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCGATCAAAGTGTTGCTGATCCACTTGACCCTATAGATCAAACTCATCTAGCGTGGAACATTACTGTGCATTCCCTTTCTGATCTATCTTATATATCCCCTGT
CGTATTCTTATACCTCCTAAAAGAATGTTATGTTCGTGGT
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCGATCAAAGTGTTGCTGATCCACTTGACCCTATAGATCAAACTCATCTAGCGTGGAACATTACTGTGCATTCCCTTTCTGATCTATCTTATATATCCCCTGT
CGTATTCTTATACCTCCTAAAAGAATGTTATGTTCGTGGT
Protein sequenceShow/hide protein sequence
MGFDQSVADPLDPIDQTHLAWNITVHSLSDLSYISPVVFLYLLKECYVRG